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Job request: 518

Organisation:
Workspace:
eth-2nd-wave-branch
ID:
y3bg7y5kklglbrks
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Rohini Mathur requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    main_eth5
    Status:
    Status: Failed
    Job identifier:
    cl6uc675auofuv2o
    Error:
    Not starting as dependency failed
  • Action:
    crmain
    Status:
    Status: Failed
    Job identifier:
    altewwgeg6q52lvt
    Error:
    Not starting as dependency failed
  • Action:
    check_eth16
    Status:
    Status: Failed
    Job identifier:
    mpbgxgmgia7ejgl4
    Error:
    Not starting as dependency failed
  • Action:
    check_eth5
    Status:
    Status: Failed
    Job identifier:
    y4acnmf7bjrdyn4p
    Error:
    Not starting as dependency failed
  • Action:
    check_region
    Status:
    Status: Failed
    Job identifier:
    6qyntjyqiktursni
    Error:
    Not starting as dependency failed
  • Action:
    table1_eth16
    Status:
    Status: Failed
    Job identifier:
    nf4btjw4oslicudn
    Error:
    Not starting as dependency failed
  • Action:
    table1_eth5
    Status:
    Status: Failed
    Job identifier:
    qfoj7h74v3ukyzzs
    Error:
    Not starting as dependency failed
  • Action:
    main_eth16
    Status:
    Status: Failed
    Job identifier:
    6cx5dtkp674mok3d
    Error:
    Not starting as dependency failed
  • Action:
    generate_cohorts
    Status:
    Status: Succeeded
    Job identifier:
    tmcebdxq5zecgslj

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 100000

actions:
  generate_cohorts:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv


  crmain:
    run: stata-mp:latest analysis/01_eth_cr_analysis_dataset.do
    needs: [generate_cohorts]
    outputs:
      highly_sensitive:
        data: output/analysis_dataset.dta
        stsettested: output/analysis_dataset_STSET_tested.dta
        stsetpositiivetest: output/analysis_dataset_STSET_positivetest.dta
        stsethes: output/analysis_dataset_STSET_hes.dta
        stsetonscoviddeath: output/analysis_dataset_STSET_onscoviddeath.dta
        stsetons_noncoviddeath: output/analysis_dataset_STSET_ons_noncoviddeath.dta
        stsetonsdeath: output/analysis_dataset_STSET_onsdeath.dta 
      moderately_sensitive:
        log: logs/01_eth_cr_analysis_dataset.log

  check_eth16:
    run: stata-mp:latest analysis/02a_eth_outcomes_checks_eth16.do
    needs: [crmain]
    outputs:
      moderately_sensitive:
        log: logs/02a_outcomes_checks_eth16.log
        table: output/table0_outcomes_eth16.txt


  check_eth5:
    run: stata-mp:latest analysis/02b_eth_outcomes_checks_eth5.do
    needs: [crmain]
    outputs:
      moderately_sensitive:
        log: logs/02b_outcomes_checks_eth5.log
        table: output/table0_outcomes_eth5.txt

  check_region:
    run: stata-mp:latest analysis/05a_eth_region_check.do
    needs: [crmain]
    outputs:
      moderately_sensitive:
        log: logs/05_region_check.log
        table: output/table3_region.txt

  table1_eth16:
    run: stata-mp:latest analysis/03a_eth_table1_descriptives_eth16_nocarehomes.do
    needs: [crmain]
    outputs:
      moderately_sensitive:
        log: logs/03a_eth_table1_eth16_nocarehomes.log
        table: output/table1_eth16.txt

  table1_eth5:
    run: stata-mp:latest analysis/03b_eth_table1_descriptives_eth5_nocarehomes.do
    needs: [crmain]
    outputs:
      moderately_sensitive:
        log: logs/03b_eth_table1_eth5_nocarehomes.log
        table: output/table1_eth5.txt

  main_eth16:
    run: stata-mp:latest analysis/04a_eth_an_multivariable_eth16_nocarehomes.do
    needs: [crmain]
    outputs:
      moderately_sensitive:
        log: logs/04a_eth_an_multivariable_eth16.log
        table: output/table2_eth16.txt
        estout: output/estout_table2_eth16.txt
        graph: output/FP_multivariable_eth16.txt

  main_eth5:
    run: stata-mp:latest analysis/04b_eth_an_multivariable_eth5_nocarehomes.do
    needs: [crmain]
    outputs:
      moderately_sensitive:
        log: logs/04b_eth_an_multivariable_eth5.log
        table: output/table2_eth5.txt
        estout: output/estout_table2_eth5.txt
        graph: output/FP_multivariable_eth5.txt

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:41

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
eth-2nd-wave-branch
Requested by
Rohini Mathur
Branch
remove-ICU-outcome
Force run dependencies
No
Git commit hash
338d2a1
Requested actions
  • crmain
  • check_eth16
  • check_eth5
  • check_region
  • table1_eth16
  • table1_eth5
  • main_eth16
  • main_eth5

Code comparison

Compare the code used in this job request

  • No previous job request available for comparison