Job request: 699
- Organisation:
- Workspace:
- ethnicity-master
- ID:
- wikbbamniub4xdyq
This page shows the technical details of what happened when the authorised researcher Rohini Mathur requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
4cr5aau334rg5ymj
Pipeline
Show project.yaml
version: "3.0"
expectations:
population_size: 100000
actions:
generate_cohorts:
run: cohortextractor:latest generate_cohort --study-definition study_definition
outputs:
highly_sensitive:
cohort: output/input.csv
crmain:
run: stata-mp:latest analysis/01_eth_cr_analysis_dataset.do
needs: [generate_cohorts]
outputs:
highly_sensitive:
data: output/analysis_dataset.dta
moderately_sensitive:
log: logs/01_eth_cr_analysis_dataset.log
cr_sgss:
run: stata-mp:latest analysis/01b_eth_cr_stset_sgss.do
needs: [crmain]
outputs:
highly_sensitive:
stsettested: output/analysis_dataset_STSET_tested.dta
stsetpositiivetest: output/analysis_dataset_STSET_positivetest.dta
moderately_sensitive:
log: logs/01b_eth_cr_stset_sgss.log
cr_hes_covid:
run: stata-mp:latest analysis/01c_eth_cr_stset_hes.do
needs: [crmain]
outputs:
highly_sensitive:
stsethes: output/analysis_dataset_STSET_hes.dta
stseticu: output/analysis_dataset_STSET_icu.dta
stsetonscoviddeath: output/analysis_dataset_STSET_onscoviddeath.dta
moderately_sensitive:
log: logs/01c_eth_cr_stset_hes_covid.log
cr_ons:
run: stata-mp:latest analysis/01d_eth_cr_stset_death.do
needs: [crmain]
outputs:
highly_sensitive:
stsetons_noncoviddeath: output/analysis_dataset_STSET_ons_noncoviddeath.dta
stsetonsdeath: output/analysis_dataset_STSET_onsdeath.dta
moderately_sensitive:
log: logs/01d_eth_cr_stset_death.log
cr_confirmed:
run: stata-mp:latest analysis/01e_eth_cr_stset_confirmedcovid.do
needs: [crmain]
outputs:
highly_sensitive:
stset_onsconfirmeddeath: output/analysis_dataset_STSET_onsconfirmeddeath.dta
moderately_sensitive:
log: logs/01e_eth_cr_stset_onsconfirmeddeath.log
cr_underlying:
run: stata-mp:latest analysis/01f_eth_cr_stset_underlyingcovid.do
needs: [crmain]
outputs:
highly_sensitive:
stset_onsconfirmeddeath: output/analysis_dataset_STSET_onsunderlyingdeath.dta
moderately_sensitive:
log: logs/01e_eth_cr_stset_onsunderlyingdeath.log
check_region:
run: stata-mp:latest analysis/02b_eth_region_check.do
needs: [crmain]
outputs:
moderately_sensitive:
log: logs/02b_region_check.log
table: output/table0_region.txt
check_tested:
run: stata-mp:latest analysis/21_eth_tested_characteristics.do
needs: [crmain]
outputs:
moderately_sensitive:
table: output/table1_tested.txt
main_carehomes_eth5:
run: stata-mp:latest analysis/06b_eth_an_multivariable_eth5_carehomesonly.do
needs: [cr_hes_covid]
outputs:
moderately_sensitive:
log: logs/06b_eth_an_hes_eth5_carehomesonly.log
table: output/table2_hes_eth5_carehomesonly.txt
estout: output/estout_table2_hes_eth5_carehomesonly.txt
graph: output/FP_hes_eth5_carehomesonly.txt
sens_nostp_eth16:
run: stata-mp:latest analysis/07a_eth_sensanalysis_nostp_eth16.do
needs: [cr_sgss, cr_hes_covid, cr_ons]
outputs:
moderately_sensitive:
log: logs/07a_eth_sensanalysis_nostp_eth16.log
table: output/sens_nostp_eth16.txt
estout: output/estout_sens_nostp_eth16.txt
graph: output/FP_sens_nostp_eth16.txt
sens_nostp_eth5:
run: stata-mp:latest analysis/07b_eth_sensanalysis_nostp_eth5.do
needs: [cr_sgss, cr_hes_covid, cr_ons]
outputs:
moderately_sensitive:
log: logs/07b_eth_sensanalysis_nostp_eth5.log
table: output/sens_nostp_eth5.txt
estout: output/estout_sens_nostp_eth5.txt
graph: output/FP_sens_nostp_eth5.txt
sens_ruralurban_eth16:
run: stata-mp:latest analysis/07c_eth_sensanalysis_ruralurban_eth16.do
needs: [cr_sgss, cr_hes_covid, cr_ons]
outputs:
moderately_sensitive:
log: logs/07c_eth_sensanalysis_ruralurban_eth16.log
estout: output/estout_sens_ruralurban_eth16.txt
sens_confirmed_eth16:
run: stata-mp:latest analysis/06c_eth_sensanalysis_confirmedcovid_eth16.do
needs: [cr_confirmed]
outputs:
moderately_sensitive:
log: logs/06c_sens_onsconfirmeddeath_eth16.log
estout: output/estout_onsconfirmeddeath_eth16.txt
graph: output/FP_sens_onsconfirmeddeath_eth16.txt
sens_confirmed_eth5:
run: stata-mp:latest analysis/06d_eth_sensanalysis_confirmedcovid_eth5.do
needs: [cr_confirmed]
outputs:
moderately_sensitive:
log: logs/06d_sens_onsconfirmeddeath_eth5.log
estout: output/estout_onsconfirmeddeath_eth5.txt
graph: output/FP_sens_onsconfirmeddeath_eth5.txt
sens_underlying_eth16:
run: stata-mp:latest analysis/06f_eth_sensanalysis_underlyingcovid_eth16.do
needs: [cr_underlying]
outputs:
moderately_sensitive:
log: logs/06f_sens_onsunderlyingdeath_eth16.log
estout: output/estout_onsunderlyingdeath_eth16.txt
graph: output/FP_sens_onsunderlyingdeath_eth16.txt
sens_underying_eth5:
run: stata-mp:latest analysis/06e_eth_sensanalysis_underlyingcovid_eth5.do
needs: [cr_underlying]
outputs:
moderately_sensitive:
log: logs/06e_sens_onsunderlyingdeath_eth5.log
estout: output/estout_onsunderlyingdeath_eth5.txt
graph: output/FP_sens_onsunderlyingdeath_eth5.txt
main_eth16_testedpop:
run: stata-mp:latest analysis/11a_eth_an_testedpop_eth16_nocarehomes.do
needs: [crmain]
outputs:
moderately_sensitive:
log: logs/11a_eth_an_testedpop_eth16.log
table: output/table3_testedpop_eth16_nocarehomes.txt
estout: output/estout_table3_testedpop_eth16_nocarehomes.txt
graph: output/FP_testedpop_eth16.txt
main_eth5_testedpop:
run: stata-mp:latest analysis/11b_eth_an_testedpop_eth5_nocarehomes.do
needs: [crmain]
outputs:
moderately_sensitive:
log: logs/11b_eth_an_testedpop_eth5.log
table: output/table3_testedpop_eth5_nocarehomes.txt
estout: output/estout_table3_testedpop_eth5_nocarehomes.txt
graph: output/FP_testedpop_eth5.txt
main_eth16_infectedpop:
run: stata-mp:latest analysis/12a_eth_an_infectedpop_eth16_nocarehomes.do
needs: [crmain]
outputs:
moderately_sensitive:
log: logs/12a_eth_an_infectedpop_eth16.log
table: output/table4_infectedpop_eth16_nocarehomes.txt
estout: output/estout_table4_infectedpop_eth16_nocarehomes.txt
graph: output/FP_infectedpop_eth16.txt
main_eth5_infectedpop:
run: stata-mp:latest analysis/12b_eth_an_infectedpop_eth5_nocarehomes.do
needs: [crmain]
outputs:
moderately_sensitive:
log: logs/12b_eth_an_infectedpop_eth5.log
table: output/table4_infectedpop_eth5_nocarehomes.txt
estout: output/estout_table4_infectedpop_eth5_nocarehomes.txt
graph: output/FP_infectedpop_eth5.txt
check_ph:
run: stata-mp:latest analysis/20_eth_an_model_checks.do
needs: [cr_sgss, cr_hes_covid, cr_ons]
outputs:
moderately_sensitive:
table: output/Table_phtest_eth5.txt
graph1: output/kmplots_combined.svg
graph2: output/stphplots_combined.svg
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime:
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Failed
- Backend
- TPP
- Workspace
- ethnicity-master
- Requested by
- Rohini Mathur
- Branch
- master
- Force run dependencies
- No
- Git commit hash
- 35a6007
- Requested actions
-
-
check_ph
-
Code comparison
Compare the code used in this Job Request