Job request: 24952

version: '3.0'

# Ignore this`expectation` block. It is required but not used, and will be removed in future versions.
expectations:
  population_size: 5000

actions:
#   generate_dataset:
#     run: > 
#       ehrql:v1 generate-dataset analysis/dataset_definition_dx_to_med_time.py
#       --output output/adhd_dataset.csv.gz
#     outputs:
#       highly_sensitive:
#         adhd_dataset: output/adhd_dataset.csv.gz

#   generate_output_table:
#     run: python:v2 python analysis/calculate_time_diff_from_dx_to_med.py
#     needs: [generate_dataset]
#     outputs:
#       moderately_sensitive:
#         table1: output/adhd_dia_med_gap_weeks.csv
  
#   generate_adhd_prevalence:
#     run: > 
#       ehrql:v1 generate-measures analysis/measures_definition.py 
#       --output output/adhd_prevalence.csv
#     outputs:
#       moderately_sensitive:
#         measure: output/adhd_prevalence.csv

#   thin_slice_medication: 
#     run: > 
#       ehrql:v1 generate-measures analysis/medication_thin_slice_measures.py
#       --output output/thin_slice_medication_measures.csv 
#     outputs:
#       moderately_sensitive:
#         measure: output/thin_slice_medication_measures.csv

  Table_2_Prevalence_of_ADHD_Diagnosis:
    run: > 
      ehrql:v1 generate-measures analysis/Table_2_Prevalence_of_ADHD_Diagnosis.py
      --output output/Table_2_Prevalence_of_ADHD_Diagnosis.csv
    outputs:
      moderately_sensitive:
        measure: output/Table_2_Prevalence_of_ADHD_Diagnosis.csv

  # Table_2_Prevalence_of_ADHD_Remission:
  #   run: > 
  #     ehrql:v1 generate-measures analysis/Table_2_Prevalence_of_ADHD_Remission.py 
  #     --output output/Table_2_Prevalence_of_ADHD_Remission.csv
  #   outputs:
  #     moderately_sensitive:
  #       measure: output/Table_2_Prevalence_of_ADHD_Remission.csv

  Patient_table_3_rolling_6month_incident:
    run: > 
      ehrql:v1 generate-dataset analysis/Patient_table_3_rolling_6month_incident.py
      --output output/Patient_table_3_rolling_6month_incident.csv.gz
    outputs:
      highly_sensitive:
        measure: output/Patient_table_3_rolling_6month_incident.csv.gz

  Table_3_rolling_6_month_medication:
    run: python:v2 python analysis/Table_3_rolling_6_month_medication.py
    needs: [Patient_table_3_rolling_6month_incident]
    outputs:
      moderately_sensitive:
        table1: output/Table_3_rolling_6_month_medication.csv

  Table_3_with_ADHD_that_are_prescribed_ADHD_medication:
    run: > 
      ehrql:v1 generate-measures analysis/Table_3_with_ADHD_that_are_prescribed_ADHD_medication.py
      --output output/Table_3_with_ADHD_that_are_prescribed_ADHD_medication.csv 
    outputs:
      moderately_sensitive:
        measure: output/Table_3_with_ADHD_that_are_prescribed_ADHD_medication.csv
  
  Table_3_without_ADHD_that_are_prescribed_ADHD_medication:
    run: > 
      ehrql:v1 generate-measures analysis/Table_3_without_ADHD_that_are_prescribed_ADHD_medication.py
      --output output/Table_3_without_ADHD_that_are_prescribed_ADHD_medication.csv 
    outputs:
      moderately_sensitive:
        measure: output/Table_3_without_ADHD_that_are_prescribed_ADHD_medication.csv

  Table_3_are_prescribed_ADHD_medication_in_ADHD_group:
    run: > 
      ehrql:v1 generate-measures analysis/Table_3_are_prescribed_ADHD_medication_in_ADHD_group.py
      --output output/Table_3_are_prescribed_ADHD_medication_in_ADHD_group.csv 
    outputs:
      moderately_sensitive:
        measure: output/Table_3_are_prescribed_ADHD_medication_in_ADHD_group.csv

  Table_3_percentage_of_people_with_ADHD_then_have_had_meds_in_the_last_6_months:
    run: > 
      ehrql:v1 generate-measures analysis/Table_3_percentage_of_people_with_ADHD_then_have_had_meds_in_the_last_6_months.py
      --output output/Table_3_percentage_of_people_with_ADHD_then_have_had_meds_in_the_last_6_months.csv 
    outputs:
      moderately_sensitive:
        measure: output/Table_3_percentage_of_people_with_ADHD_then_have_had_meds_in_the_last_6_months.csv

  # Table_3_with_ADHD_that_are_NOT_prescribed_ADHD_medication:
  #   run: > 
  #     ehrql:v1 generate-measures analysis/Table_3_with_ADHD_that_are_NOT_prescribed_ADHD_medication.py
  #     --output output/Table_3_with_ADHD_that_are_NOT_prescribed_ADHD_medication.csv 
  #   outputs:
  #     moderately_sensitive:
  #       measure: output/Table_3_with_ADHD_that_are_NOT_prescribed_ADHD_medication.csv

  # Table_3_NOT_prescribed_ADHD_medication_in_ADHD_group:
  #   run: > 
  #     ehrql:v1 generate-measures analysis/Table_3_NOT_prescribed_ADHD_medication_in_ADHD_group.py
  #     --output output/Table_3_NOT_prescribed_ADHD_medication_in_ADHD_group.csv 
  #   outputs:
  #     moderately_sensitive:
  #       measure: output/Table_3_NOT_prescribed_ADHD_medication_in_ADHD_group.csv

  Patient_table_5_dia_to_med:
    run: > 
      ehrql:v1 generate-dataset analysis/Patient_table_5_dia_to_med.py
      --output output/Patient_table_5_dia_to_med.csv.gz
    outputs:
      highly_sensitive:
        measure: output/Patient_table_5_dia_to_med.csv.gz

  Table_5_time_from_diagnosis_to_treatment:
    run: python:v2 python analysis/Table_5_time_from_diagnosis_to_treatment.py
    needs: [Patient_table_5_dia_to_med]
    outputs:
      moderately_sensitive:
        table1: output/Table_5_time_from_diagnosis_to_treatment.csv

  Context_txt:
    run: python:v2 analysis/Context_doc.py
    outputs:
      moderately_sensitive:
        table1: output/context.txt