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Job request: 3635

Organisation:
University of Bristol
Workspace:
germdefence
ID:
jyv7gnqaaqmpv37w
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Scott Walter requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    run_model
    Status:
    Status: Failed
    Job identifier:
    5xem6ijrqyamqxgc
    Error:
    nonzero_exit: Job exited with an error code

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2020-07-14 to 2021-03-15 by week" --skip-existing --output-format=csv.gz --output-dir=output/measures
    outputs:
      highly_sensitive:
        cohort: output/measures/input_*.csv.gz


  generate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures
    needs: [generate_study_population]
    outputs:
      highly_sensitive:
        measure_csv: output/measures/measure_*.csv

  run_model:
    run: stata-mp:latest analysis/model_test.do --output-dir=output
    outputs:
      moderately_sensitive:
        model: output/PerProtocol.xlsx
        log: output/log.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:03

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
germdefence
Requested by
Scott Walter
Branch
main
Force run dependencies
No
Git commit hash
22248cb
Requested actions
  • run_model

Code comparison

Compare the code used in this job request