Job request: 4289
- Organisation:
- University of Bristol
- Workspace:
- germdefence
- ID:
- twxbdsqhkrpf7k6p
This page shows the technical details of what happened when authorised researcher Scott Walter requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
vg6qpjxzb6pmqelh
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 10000
actions:
generate_study_population:
run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2020-07-14 to 2021-03-15 by week" --skip-existing --output-format=csv.gz --output-dir=output/measures
outputs:
highly_sensitive:
cohort: output/measures/input_*.csv.gz
generate_practice_variables:
run: cohortextractor:latest generate_cohort --study-definition study_definition_practice --skip-existing --output-format=dta --output-dir=output
outputs:
highly_sensitive:
cohort: output/input_practice.dta
generate_measures:
run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures
needs: [generate_study_population]
outputs:
highly_sensitive:
measure_csv: output/measures/measure_*.csv
run_practice_variables:
run: stata-mp:latest analysis/practice_variables.do
needs: [generate_practice_variables]
outputs:
moderately_sensitive:
model: output/practice_variables.dta
model2: output/practice_variables.xlsx
run_model:
run: stata-mp:latest analysis/model.do
needs: [generate_measures, run_practice_variables]
outputs:
moderately_sensitive:
model1: output/PerProtocol.xlsx
model2: output/DiD_weekly.xlsx
data: output/process_eval.dta
check: output/weekly_check.xlsx
check2: output/practice_weekly_glmm.xlsx
model3: output/CITS_weekly.xlsx
model4: output/CITS_RandInt.xlsx
plot1: output/rti_plot.pdf
plot2: output/arti_plot.pdf
plot3: output/gastro_plot.pdf
plot4: output/coviddiag_plot.pdf
plot5: output/covidsympsens_plot.pdf
plot6: output/covidsympspec_plot.pdf
plot7: output/antibio_plot.pdf
plot8: output/adm_plot.pdf
run_process_evaluation:
run: stata-mp:latest analysis/process_eval.do
needs: [run_model]
outputs:
moderately_sensitive:
model1: output/process_eval.xlsx
model2: output/process_eval_cat.xlsx
model3: output/process_eval2.xlsx
model4: output/process_eval_cat2.xlsx
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 00:00:22
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- germdefence
- Requested by
- Scott Walter
- Branch
- main
- Force run dependencies
- No
- Git commit hash
- adc5b88
- Requested actions
-
-
run_process_evaluation
-
Code comparison
Compare the code used in this Job Request