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Job request: 1052

Organisation:
Bennett Institute
Workspace:
highcostdrugs_adalimumab_master
ID:
qfo5rpzqrkaifmsg
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Anna Rowan requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population
    Status:
    Status: Succeeded
    Job identifier:
    iiahexj5ogcgerjg
  • Action:
    run_model
    Status:
    Status: Failed
    Job identifier:
    gczxz3inyzgycm7n
    Error:
    nonzero_exit: Job exited with an error code

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 50000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_adalimumab
    outputs:
      highly_sensitive:
        cohort: output/input_adalimumab.csv
        
  run_model:
    run: r:latest analysis/summary_output.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        analysis: output/*

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:06:11

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
highcostdrugs_adalimumab_master
Requested by
Anna Rowan
Branch
master
Force run dependencies
Yes
Git commit hash
71fe081
Requested actions
  • run_all

Code comparison

Compare the code used in this job request