Skip to content

Job request: 1052

Organisation:
Bennett Institute
Workspace:
highcostdrugs_adalimumab_master
ID:
qfo5rpzqrkaifmsg
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Anna Rowan requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 50000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_adalimumab
    outputs:
      highly_sensitive:
        cohort: output/input_adalimumab.csv
        
  run_model:
    run: r:latest analysis/summary_output.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        analysis: output/*

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:06:11

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Workspace
highcostdrugs_adalimumab_master
Requested by
Anna Rowan
Branch
master
Force run dependencies
Yes
Git commit hash
71fe081
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request