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Job request: 1003

Organisation:
Bennett Institute
Workspace:
highcostdrugs_adalimumab_v2_sample
ID:
t2osicmds4vl5mz2
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Anna Rowan requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population
    Status:
    Status: Failed
    Job identifier:
    r2ej3tjouzdfwfbs
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    run_model
    Status:
    Status: Failed
    Job identifier:
    4kdqpdazcdqu5hsk
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 50000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_adalimumab
    outputs:
      highly_sensitive:
        cohort: output/input_adalimumab.csv
        
  run_model:
    run: r:latest analysis/summary_output.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        analysis: output/summary_adalimumab.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:12

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
highcostdrugs_adalimumab_v2_sample
Requested by
Anna Rowan
Branch
study_def
Force run dependencies
No
Git commit hash
eb70387
Requested actions
  • run_all

Code comparison

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