Skip to content

Job request: 1125

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
hh-classification-research
ID:
lplfvymc2jlvvgl5
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kevin Wing requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 100000

actions:
  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  W2_generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_W2
    outputs:
      highly_sensitive:
        cohort: output/input_W2.csv

  01_hhClassif_cr_analysis_dataset:
    run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do MAIN
    needs: [generate_cohort]
    outputs:
      highly_sensitive:
        allvars: output/hhClassif_analysis_datasetMAIN.dta
      moderately_sensitive:
        log: logs/01_hhClassif_cr_analysis_dataset.log

  01_hhClassif_cr_analysis_dataset_W2:
    run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do W2
    needs: [W2_generate_cohort]
    outputs:
      highly_sensitive:
        allvars: output/hhClassif_analysis_datasetW2.dta
      moderately_sensitive:
        log: logs/01_hhClassif_cr_analysis_dataset_W2.log

  02_hhClassif_an_data_checks:
    run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/02_hhClassif_an_data_checks.log

  02_hhClassif_an_data_checks_W2:
    run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do W2
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    outputs:
      moderately_sensitive:
        log: logs/02_hhClassif_an_data_checks_W2.log

  03_hhClassif_an_descriptive_table_1:
    run: stata-mp:latest analysis/03_hhClassif_an_descriptive_table_1.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/03_hhClassif_an_descriptive_table_1.log
        tableTxt: output/table1_hhClassif.txt
        tableExcel: output/table1_hhClassif.xlsx

  03_hhClassif_an_descriptive_table_1_W2:
    run: stata-mp:latest analysis/03_hhClassif_an_descriptive_table_1.do W2
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    outputs:
      moderately_sensitive:
        log: logs/03_hhClassif_an_descriptive_table_1_W2.log
        tableTxt: output/table1_hhClassif_W2.txt
        tableExcel: output/table1_hhClassif_W2.xlsx

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 05:41:10

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
hh-classification-research
Requested by
Kevin Wing
Branch
master
Force run dependencies
Yes
Git commit hash
52823b4
Requested actions
  • 03_hhClassif_an_descriptive_table_1_W2

Code comparison

Compare the code used in this Job Request