Job request: 1570
- Organisation:
- The London School of Hygiene & Tropical Medicine
- Workspace:
- hh-classification-research
- ID:
- tzmyhhua4afvtgrl
This page shows the technical details of what happened when the authorised researcher Kevin Wing requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
tamdqsnuobgthnip
-
- Job identifier:
-
oa4wcygvimymnmvl
Pipeline
Show project.yaml
version: "3.0"
expectations:
population_size: 100000
actions:
generate_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition
outputs:
highly_sensitive:
cohort: output/input.csv
W2_generate_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition_W2
outputs:
highly_sensitive:
cohort: output/input_W2.csv
01_hhClassif_cr_analysis_dataset:
run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do MAIN
needs: [generate_cohort]
outputs:
highly_sensitive:
allvars: output/hhClassif_analysis_datasetMAIN.dta
allvarsEthMiss: output/hhClassif_analysis_dataset_with_missing_ethnicityMAIN.dta
allVarsAgeSpline: output/hhClassif_analysis_dataset_ageband_*MAIN.dta
allVarsAgeStratStset: output/hhClassif_analysis_dataset_STSET_*_ageband_*MAIN.dta
moderately_sensitive:
log: logs/01_hhClassif_cr_analysis_dataset.log
01_hhClassif_cr_analysis_dataset_W2:
run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do W2
needs: [W2_generate_cohort]
outputs:
highly_sensitive:
allvars: output/hhClassif_analysis_datasetW2.dta
allvarsEthMiss: output/hhClassif_analysis_dataset_with_missing_ethnicityW2.dta
allVarsAgeSpline: output/hhClassif_analysis_dataset_ageband_*W2.dta
allVarsAgeStratStset: output/hhClassif_analysis_dataset_STSET_*_ageband_*W2.dta
moderately_sensitive:
log: logs/01_hhClassif_cr_analysis_dataset_W2.log
02_hhClassif_an_data_checks:
run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/02_hhClassif_an_data_checks.log
02_hhClassif_an_data_checks_W2:
run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do W2
needs: [01_hhClassif_cr_analysis_dataset_W2]
outputs:
moderately_sensitive:
log: logs/02_hhClassif_an_data_checks_W2.log
03_hhClassif_an_descriptive_table_1:
run: stata-mp:latest analysis/03_hhClassif_an_descriptive_table_1.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/03_hhClassif_an_descriptive_table_1.log
tableTxt: output/table1_hhClassif.txt
tableExcel: output/table1_hhClassif.xlsx
03_hhClassif_an_descriptive_table_1_W2:
run: stata-mp:latest analysis/03_hhClassif_an_descriptive_table_1.do W2
needs: [01_hhClassif_cr_analysis_dataset_W2]
outputs:
moderately_sensitive:
log: logs/03_hhClassif_an_descriptive_table_1_W2.log
tableTxt: output/table1_hhClassif_W2.txt
tableExcel: output/table1_hhClassif_W2.xlsx
04_hhClassif_an_univariable_analysis:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/04_hhClassif_an_univariable_analysis.do MAIN
outputs:
moderately_sensitive:
log: logs/04_hhClassif_an_univariable_analysis_MAIN.log
data: output/an_univariable_cox_models_*_AGESEX_ageband_*MAIN.ster
04_hhClassif_an_univariable_analysis_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/04_hhClassif_an_univariable_analysis.do W2
outputs:
moderately_sensitive:
log: logs/04_hhClassif_an_univariable_analysis_W2.log
data: output/an_univariable_cox_models_*_AGESEX_ageband_*W2.ster
05_hhClassif_an_multivariable_analysis:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/05_hhClassif_an_multivariable_analysis.do MAIN
outputs:
moderately_sensitive:
log: logs/05_hhClassif_an_multivariable_analysis_MAIN.log
data: output/an_multivariable_cox_models_*_AGESEX_ageband_*MAIN.ster
05_hhClassif_an_multivariable_analysis_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/05_hhClassif_an_multivariable_analysis.do W2
outputs:
moderately_sensitive:
log: logs/05_hhClassif_an_multivariable_analysis_W2.log
data: output/an_multivariable_cox_models_*_AGESEX_ageband_*W2.ster
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 06:33:42
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- hh-classification-research
- Requested by
- Kevin Wing
- Branch
- master
- Force run dependencies
- No
- Git commit hash
- 9330181
- Requested actions
-
-
05_hhClassif_an_multivariable_analysis
-
05_hhClassif_an_multivariable_analysis_W2
-
Code comparison
Compare the code used in this Job Request