Job request: 6979
- Organisation:
- The London School of Hygiene & Tropical Medicine
- Workspace:
- hh-classification-research
- ID:
- 7eekbsngec4yucaj
This page shows the technical details of what happened when authorised researcher Kevin Wing requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
j5lx4dci7pgsyhnh
-
- Job identifier:
-
non6eyimbiivrodv
-
- Job identifier:
-
h2i2rao7jizj6f32
-
- Job identifier:
-
n4mdvdzit4ncerwq
-
- Job identifier:
-
insstgqkhrgmssqk
Pipeline
Show project.yaml
version: "3.0"
expectations:
population_size: 200000
actions:
generate_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition
outputs:
highly_sensitive:
cohort: output/input.csv
W2_generate_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition_W2
outputs:
highly_sensitive:
cohort: output/input_W2.csv
01_hhClassif_cr_analysis_dataset:
run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do MAIN
needs: [generate_cohort]
outputs:
highly_sensitive:
# allHHSizes: output/allHH_beforeDropping_largerThan10_MAIN.dta
allHHSizes1_20: output/allHH_sizedBetween1And20_MAIN.dta
allHHSizes1_12Incl: output/allHH_sizedBetween1And12_MAIN.dta
allvars: output/hhClassif_analysis_datasetMAIN.dta
allvarsEthMiss: output/hhClassif_analysis_dataset_with_missing_ethnicityMAIN.dta
allvarsEthMiss2: output/hhClassif_analysis_dataset_with_missing_ethnicity_ageband_*MAIN.dta
allVarsAgeSpline: output/hhClassif_analysis_dataset_ageband_*MAIN.dta
allVarsAgeStratStset: output/hhClassif_analysis_dataset_STSET_*_ageband_*MAIN.dta
moderately_sensitive:
log: logs/01_hhClassif_cr_analysis_dataset.log
01_hhClassif_cr_analysis_dataset_W2:
run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do W2
needs: [W2_generate_cohort]
outputs:
highly_sensitive:
# allHHSizes: output/allHH_beforeDropping_largerThan10_W2.dta
allHHSizes1_12Incl: output/allHH_sizedBetween1And12_W2.dta
allHHSizes1_20: output/allHH_sizedBetween1And20_W2.dta
allvars: output/hhClassif_analysis_datasetW2.dta
allvarsEthMiss: output/hhClassif_analysis_dataset_with_missing_ethnicityW2.dta
allvarsEthMiss2: output/hhClassif_analysis_dataset_with_missing_ethnicity_ageband_*W2.dta
allVarsAgeSpline: output/hhClassif_analysis_dataset_ageband_*W2.dta
allVarsAgeStratStset: output/hhClassif_analysis_dataset_STSET_*_ageband_*W2.dta
moderately_sensitive:
log: logs/01_hhClassif_cr_analysis_dataset_W2.log
01b_hhClassif_cr_imputed_datasets:
run: stata-mp:latest analysis/01b_hhClassif_cr_imputed_datasets.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
highly_sensitive:
imputedEthnicity: output/hhClassif_analysis_dataset_eth5_mi_ageband_*_STSET_*_MAIN.dta
moderately_sensitive:
log: logs/01b_hhClassif_imputed_datasets_MAIN.log
01b_hhClassif_cr_imputed_datasets_W2:
run: stata-mp:latest analysis/01b_hhClassif_cr_imputed_datasets.do W2
needs: [01_hhClassif_cr_analysis_dataset_W2]
outputs:
highly_sensitive:
imputedEthnicity: output/hhClassif_analysis_dataset_eth5_mi_ageband_*_STSET_*_W2.dta
moderately_sensitive:
log: logs/01b_hhClassif_imputed_datasets_W2.log
01bDUMMYONLY_hhClassif_cr_imputed_datasets:
run: stata-mp:latest analysis/01bDUMMYONLY_hhClassif_cr_imputed_datasets.do
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
highly_sensitive:
imputedEthnicity: output/hhClassif_analysis_dataset_eth5_mi_ageband_3_STSET_covidHospOrDeathCase_DUMMYONLY_MAIN.dta
moderately_sensitive:
log: logs/01b_hhClassif_imputed_datasets_DUMMYONLY.log
01c_SensAnalysis_Age60_hhClassif_cr_analysis_dataset_W2:
run: stata-mp:latest analysis/01c_SensAnalysis1_Age60_hhClassif_cr_analysis_dataset.do W2
needs: [W2_generate_cohort]
outputs:
highly_sensitive:
allvars: output/SensAnalysis1_Age60_datasetW2.dta
allVarsAgeSpline: output/SensAnalysis1_Age60_dataset_ageband_*W2.dta
allVarsAgeStratStset: output/SensAnalysis1_Age60_dataset_STSET_*_ageband_*W2.dta
moderately_sensitive:
log: logs/01c_SensAnalysis1_Age60_hhClassif_cr_analysis_dataset_W2.log
02_hhClassif_an_data_checks:
run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/02_hhClassif_an_data_checks.log
02_hhClassif_an_data_checks_W2:
run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do W2
needs: [01_hhClassif_cr_analysis_dataset_W2]
outputs:
moderately_sensitive:
log: logs/02_hhClassif_an_data_checks_W2.log
02b_hhClassif_an_checking_hhVars:
run: stata-mp:latest analysis/02b_hhClassif_an_checking_hhVars.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/02b_hhClassif_an_checking_hhVars_MAIN.log
#table: output/02b_hhClassif_an_checking_hhVars_MAIN.txt
02b_hhClassif_an_checking_hhVars_W2:
run: stata-mp:latest analysis/02b_hhClassif_an_checking_hhVars.do W2
needs: [01_hhClassif_cr_analysis_dataset_W2]
outputs:
moderately_sensitive:
log: logs/02b_hhClassif_an_checking_hhVars_W2.log
#table: output/02b_hhClassif_an_checking_hhVars_W2.txt
03a_hhClassif_an_hist_hhSizebyEthnicity:
run: stata-mp:latest analysis/03a_hhClassif_an_hist_hhSizebyEthnicity.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/03a_hhClassif_an_hist_hhSizebyEthnicity_MAIN.log
gph1: output/overallHHSizeDist_MAIN.gph
gph2: output/whiteHHSizeDist_MAIN.gph
gph3: output/southAsianHHSizeDist_MAIN.gph
gph4: output/blackHHSizeDist_MAIN.gph
gph5: output/HHdistHists_MAIN.pdf
03b_hhClassif_an_hist_ov65hhSizebyEthnicity:
run: stata-mp:latest analysis/03b_hhClassif_an_hist_ov65hhSizebyEthnicity.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/03b_hhClassif_an_hist_ov65hhSizebyEthnicity_MAIN.log
gph1: output/ov65OverallHHSizeDist_MAIN.gph
gph2: output/ov65WhiteHHSizeDist_MAIN.gph
gph3: output/ov65SouthAsianHHSizeDist_MAIN.gph
gph4: output/ov65BlackHHSizeDist_MAIN.gph
gph5: output/ov65HHdistHists_MAIN.pdf
03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge:
run: stata-mp:latest analysis/03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
highly_sensitive:
over65OnlyHH: output/housesWithOnly65yrOldsInThem_MAIN.dta
moderately_sensitive:
log: logs/03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge_MAIN.log
gph1: output/ov65OverallHHSizeDist_woAllSameAge_MAIN.gph
gph2: output/ov65WhiteHHSizeDist_woAllSameAge_MAIN.gph
gph3: output/ov65SouthAsianHHSizeDist_woAllSameAge_MAIN.gph
gph4: output/ov65BlackHHSizeDist_woAllSameAge_MAIN.gph
gph5: output/ov65HHdistHists_woAllSameAge_MAIN.pdf
03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban:
run: stata-mp:latest analysis/03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban_MAIN.log
gph1: output/ov65OverallHHSizeDist_*_MAIN.gph
gph2: output/ov65WhiteHHSizeDist_*_MAIN.gph
gph3: output/ov65SouthAsianHHSizeDist_*_MAIN.gph
gph4: output/ov65BlackHHSizeDist_*_MAIN.gph
gph5: output/ov65HHdistHists_*_MAIN.pdf
03e_hhClassif_an_descriptive_table_1:
run: stata-mp:latest analysis/03e_hhClassif_an_descriptive_table_1.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/03e_hhClassif_an_descriptive_table_1_MAIN.log
tableTxt: output/table1_hhClassifMAIN.txt
# log: logs/03e_hhClassif_hhComp_vs_hhSize_MAIN.log
03e_hhClassif_an_descriptive_table_1_W2:
run: stata-mp:latest analysis/03e_hhClassif_an_descriptive_table_1.do W2
needs: [01_hhClassif_cr_analysis_dataset_W2]
outputs:
moderately_sensitive:
log: logs/03e_hhClassif_an_descriptive_table_1_W2.log
tableTxt: output/table1_hhClassifW2.txt
# log: logs/03e_hhClassif_hhComp_vs_hhSize_W2.log
03f_hhClassif_an_descriptive_table_1_sepEthnicities:
run: stata-mp:latest analysis/03f_hhClassif_an_descriptive_table_1_sepEthnicities.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/03f_hhClassif_an_descriptive_table_1_sepEthnicities_MAIN.log
tableTxt: output/table1_hhClassif_byEthnicityMAIN.txt
03f_hhClassif_an_descriptive_table_1_sepEthnicities_W2:
run: stata-mp:latest analysis/03f_hhClassif_an_descriptive_table_1_sepEthnicities.do W2
needs: [01_hhClassif_cr_analysis_dataset_W2]
outputs:
moderately_sensitive:
log: logs/03f_hhClassif_an_descriptive_table_1_sepEthnicities_W2.log
tableTxt: output/table1_hhClassif_byEthnicityW2.txt
04_hhClassif_an_univariable_analysis:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/04_hhClassif_an_univariable_analysis.do MAIN
outputs:
moderately_sensitive:
log: logs/04_hhClassif_an_univariable_analysis_MAIN.log
data: output/hhClassif_univariableAnalysis_*_ageband_*MAIN.ster
04_hhClassif_an_univariable_analysis_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/04_hhClassif_an_univariable_analysis.do W2
outputs:
moderately_sensitive:
log: logs/04_hhClassif_an_univariable_analysis_W2.log
data: output/hhClassif_univariableAnalysis_*_ageband_*W2.ster
05_hhClassif_an_multivariable_analysis:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/05_hhClassif_an_multivariable_analysis.do MAIN
outputs:
moderately_sensitive:
log: logs/05_hhClassif_an_multivariable_analysis_MAIN.log
data: output/hhClassif_multivariableAllEthnicities_*_ageband_*MAIN.ster
05_hhClassif_an_multivariable_analysis_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/05_hhClassif_an_multivariable_analysis.do W2
outputs:
moderately_sensitive:
log: logs/05_hhClassif_an_multivariable_analysis_W2.log
data: output/hhClassif_multivariableAllEthnicities_*_ageband_*W2.ster
06_hhClassif_an_multivariable_analysis_eth5Interaction:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/06_hhClassif_an_multivariable_analysis_eth5Interaction.do MAIN
outputs:
moderately_sensitive:
log: logs/06_hhClassif_an_eth5Interaction_analysis_MAIN.log
06_hhClassif_an_multivariable_analysis_eth5Interaction_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/06_hhClassif_an_multivariable_analysis_eth5Interaction.do W2
outputs:
moderately_sensitive:
log: logs/06_hhClassif_an_eth5Interaction_analysis_W2.log
07_hhClassif_an_multivariable_analysis_perEth5Group:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/07_hhClassif_an_multivariable_analysis_perEth5Group.do MAIN
outputs:
moderately_sensitive:
log: logs/07_hhClassif_an_multivariable_analysis_perEth5Group_MAIN.log
data: output/hhClassif_multvariableAnalysisPerEth5_*_ageband_*_ethnicity_*MAIN.ster
07_hhClassif_an_multivariable_analysis_perEth5Group_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/07_hhClassif_an_multivariable_analysis_perEth5Group.do W2
outputs:
moderately_sensitive:
log: logs/07_hhClassif_an_multivariable_analysis_perEth5Group_W2.log
data: output/hhClassif_multvariableAnalysisPerEth5_*_ageband_*_ethnicity_*W2.ster
08_hhClassif_an_mv_analysis_perEth5Group_HR_table:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/08_hhClassif_an_mv_analysis_perEth5Group_HR_table.do MAIN
outputs:
moderately_sensitive:
log1: logs/08_hhClassif_tablecontent_HRtable_covidDeath_MAIN.log
log2: logs/08_hhClassif_tablecontent_HRtable_covidHosp_MAIN.log
log3: logs/08_hhClassif_tablecontent_HRtable_covidHospOrDeath_MAIN.log
log4: logs/08_hhClassif_tablecontent_HRtable_nonCovidDeath_MAIN.log
table1: output/hhClassif_tablecontents_HRtable_covidDeath_MAIN.txt
table2: output/hhClassif_tablecontents_HRtable_covidHosp_MAIN.txt
table3: output/hhClassif_tablecontents_HRtable_covidHospOrDeath_MAIN.txt
table4: output/hhClassif_tablecontents_HRtable_nonCovidDeath_MAIN.txt
08_hhClassif_an_mv_analysis_perEth5Group_HR_table_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/08_hhClassif_an_mv_analysis_perEth5Group_HR_table.do W2
outputs:
moderately_sensitive:
log1: logs/08_hhClassif_tablecontent_HRtable_covidDeath_W2.log
log2: logs/08_hhClassif_tablecontent_HRtable_covidHosp_W2.log
log3: logs/08_hhClassif_tablecontent_HRtable_covidHospOrDeath_W2.log
log4: logs/08_hhClassif_tablecontent_HRtable_nonCovidDeath_W2.log
table1: output/hhClassif_tablecontents_HRtable_covidDeath_W2.txt
table2: output/hhClassif_tablecontents_HRtable_covidHosp_W2.txt
table3: output/hhClassif_tablecontents_HRtable_covidHospOrDeath_W2.txt
table4: output/hhClassif_tablecontents_HRtable_nonCovidDeath_W2.txt
09_hhClassif_an_mv_analysis_perEth16Group_HR_table:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/09_hhClassif_an_mv_analysis_perEth16Group_HR_table.do MAIN
outputs:
moderately_sensitive:
# log1: logs/09_hhClassif_tablecontent_HRtable_eth16_covidDeath_MAIN.log
# log2: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHosp_MAIN.log
log3: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHospOrDeath_MAIN.log
# log4: logs/09_hhClassif_tablecontent_HRtable_eth16_nonCovidDeath_MAIN.log
# table1: output/hhClassif_tablecontents_HRtable_eth16_covidDeath_MAIN.txt
# table2: output/hhClassif_tablecontents_HRtable_eth16_covidHosp_MAIN.txt
table3: output/hhClassif_tablecontents_HRtable_eth16_covidHospOrDeath_MAIN.txt
# table4: output/hhClassif_tablecontents_HRtable_eth16_nonCovidDeath_MAIN.txt
09_hhClassif_an_mv_analysis_perEth16Group_HR_table_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/09_hhClassif_an_mv_analysis_perEth16Group_HR_table.do W2
outputs:
moderately_sensitive:
# log1: logs/09_hhClassif_tablecontent_HRtable_eth16_covidDeath_W2.log
# log2: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHosp_W2.log
log3: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHospOrDeath_W2.log
# log4: logs/09_hhClassif_tablecontent_HRtable_eth16_nonCovidDeath_W2.log
# table1: output/hhClassif_tablecontents_HRtable_eth16_covidDeath_W2.txt
# table2: output/hhClassif_tablecontents_HRtable_eth16_covidHosp_W2.txt
table3: output/hhClassif_tablecontents_HRtable_eth16_covidHospOrDeath_W2.txt
# table4: output/hhClassif_tablecontents_HRtable_eth16_nonCovidDeath_W2.txt
10_hh_imd_descriptives_for_Hamish_W1:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/10_hh_imd_descriptives_for_Hamish_W1.do
outputs:
moderately_sensitive:
log: logs/10_hh_imd_descriptives_for_Hamish_W1.log
# table: output/table_ethnicity_descriptivesMAIN.txt
11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable.do MAIN
outputs:
moderately_sensitive:
# log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
# log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
log3: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHospOrDeath_MAIN.log
# log4: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_nonCovidDeath_MAIN.log
# table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
# table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
# table3: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHospOrDeath_MAIN.txt
# table4: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_nonCovidDeath_MAIN.txt
11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable.do W2
outputs:
moderately_sensitive:
# log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_W2.log
# log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_W2.log
log3: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHospOrDeath_W2.log
# log4: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_nonCovidDeath_W2.log
# table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_W2.txt
# table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_W2.txt
# table3: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHospOrDeath_W2.txt
# table4: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_nonCovidDeath_W2.txt
11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS.do MAIN
outputs:
moderately_sensitive:
# log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
# log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
# log3: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_covidHospOrDeath_MAIN.log
log4: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_nonCovidDeath_MAIN.log
# table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
# table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
# table3: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_covidHospOrDeath_MAIN.txt
table4: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_nonCovidDeath_MAIN.txt
11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS.do W2
outputs:
moderately_sensitive:
# log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
# log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
# log3: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_covidHospOrDeath_W2.log
log4: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.log
# table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
# table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
# table3: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_covidHospOrDeath_W2.txt
table4: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.txt
12_hhClassif_an_MV_analysis_W_SA_multipleInteractions:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/12_hhClassif_an_MV_analysis_W_SA_multipleInteractions.do MAIN
outputs:
moderately_sensitive:
log: logs/12_hhClassif_an_MV_analysis_W_SA_multipleinteractions_MAIN.log
12_hhClassif_an_MV_analysis_W_SA_multipleinteractions_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/12_hhClassif_an_MV_analysis_W_SA_multipleInteractions.do W2
outputs:
moderately_sensitive:
log: logs/12_hhClassif_an_MV_analysis_W_SA_multipleinteractions_W2.log
13_hhClassif_an_MV_analysis_test_for_trend:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/13_hhClassif_an_MV_analysis_test_for_trend.do MAIN
outputs:
moderately_sensitive:
log: logs/13_hhClassif_an_MV_analysis_test_for_trend_MAIN.log
13_hhClassif_an_MV_analysis_test_for_trend_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/13_hhClassif_an_MV_analysis_test_for_trend.do W2
outputs:
moderately_sensitive:
log: logs/13_hhClassif_an_MV_analysis_test_for_trend_W2.log
14_hhClassif_an_MV_analyses_p_values_for_var_associations:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/14_hhClassif_an_MV_analyses_p_values_for_var_associations.do MAIN
outputs:
moderately_sensitive:
log: logs/14_hhClassif_an_MV_analyses_p_values_for_var_associations_MAIN.log
14_hhClassif_an_MV_analyses_p_values_for_var_associations_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/14_hhClassif_an_MV_analyses_p_values_for_var_associations.do W2
outputs:
moderately_sensitive:
log: logs/14_hhClassif_an_MV_analyses_p_values_for_var_associations_W2.log
15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot.do MAIN
outputs:
moderately_sensitive:
log1: logs/15_hhClassif_forForestPlot_covidDeath_MAIN.log
log2: logs/15_hhClassif_forForestPlot_covidHosp_MAIN.log
log3: logs/15_hhClassif_forForestPlot_covidHospOrDeath_MAIN.log
log4: logs/15_hhClassif_forForestPlot_nonCovidDeath_MAIN.log
table1: output/15_hhClassif_forForestPlot_covidDeath_MAIN.txt
table2: output/15_hhClassif_forForestPlot_covidHosp_MAIN.txt
table3: output/15_hhClassif_forForestPlot_covidHospOrDeath_MAIN.txt
table4: output/15_hhClassif_forForestPlot_nonCovidDeath_MAIN.txt
15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot.do W2
outputs:
moderately_sensitive:
log1: logs/15_hhClassif_forForestPlot_covidDeath_W2.log
log2: logs/15_hhClassif_forForestPlot_covidHosp_W2.log
log3: logs/15_hhClassif_forForestPlot_covidHospOrDeath_W2.log
log4: logs/15_hhClassif_forForestPlot_nonCovidDeath_W2.log
table1: output/15_hhClassif_forForestPlot_covidDeath_W2.txt
table2: output/15_hhClassif_forForestPlot_covidHosp_W2.txt
table3: output/15_hhClassif_forForestPlot_covidHospOrDeath_W2.txt
table4: output/15_hhClassif_forForestPlot_nonCovidDeath_W2.txt
16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot.do MAIN
outputs:
moderately_sensitive:
log1: logs/16_hhClassif_forForestPlot_covidHospOrDeath_MAIN.log
table1: output/16_hhClassif_forForestPlot_covidHospOrDeath_MAIN.txt
16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot.do W2
outputs:
moderately_sensitive:
log1: logs/16_hhClassif_forForestPlot_covidHospOrDeath_W2.log
table1: output/16_hhClassif_forForestPlot_covidHospOrDeath_W2.txt
17_SensAnalysis_Age60_mv_analysis_perEth5Group_HR_table_W2:
needs: [01c_SensAnalysis_Age60_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/17_SensAnalysis_Age60_mv_analysis_perEth5Group_HR_table.do W2
outputs:
moderately_sensitive:
log: logs/17_SensAnalysis_Age60_mv_analysis_perEth5Group_HR_table_covidHospOrDeath_W2.log
table: output/17_SensAnalysis_Age60_mv_analysis_perEth5Group_HR_table_covidHospOrDeath_W2.txt
18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table.do MAIN
outputs:
moderately_sensitive:
log1: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidDeath_MAIN.log
log2: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHosp_MAIN.log
log3: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHospOrDeath_MAIN.log
log4: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_nonCovidDeath_MAIN.log
table1: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidDeath_MAIN.txt
table2: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHosp_MAIN.txt
table3: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHospOrDeath_MAIN.txt
table4: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_nonCovidDeath_MAIN.txt
18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table.do W2
outputs:
moderately_sensitive:
log1: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidDeath_W2.log
log2: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHosp_W2.log
log3: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHospOrDeath_W2.log
log4: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_nonCovidDeath_W2.log
table1: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidDeath_W2.txt
table2: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHosp_W2.txt
table3: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHospOrDeath_W2.txt
table4: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_nonCovidDeath_W2.txt
19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table.do MAIN
outputs:
moderately_sensitive:
log1: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidDeath_MAIN.log
log2: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHosp_MAIN.log
log3: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHospOrDeath_MAIN.log
log4: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_nonCovidDeath_MAIN.log
table1: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidDeath_MAIN.txt
table2: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHosp_MAIN.txt
table3: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHospOrDeath_MAIN.txt
table4: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_nonCovidDeath_MAIN.txt
19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table.do W2
outputs:
moderately_sensitive:
#log1: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidDeath_W2.log
#log2: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHosp_W2.log
log3: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHospOrDeath_W2.log
#log4: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_nonCovidDeath_W2.log
#table1: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidDeath_W2.txt
#table2: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHosp_W2.txt
table3: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHospOrDeath_W2.txt
#table4: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_nonCovidDeath_W2.txt
19b_hhClassif_p-values_for_compSizeExp_covidHospOrDeath_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/19b_hhClassif_p-values_for_compSizeExp_covidHospOrDeath.do W2
outputs:
moderately_sensitive:
log: logs/19b_hhClassif_p-values_compSizeExp_covidHospOrDeath_W2.log
20_hhClassif_an_testing_interactions:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/20_hhClassif_an_testing_interactions.do MAIN
outputs:
moderately_sensitive:
log: logs/20_hhClassif_an_testing_interactions_MAIN.log
20_hhClassif_an_testing_interactions_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/20_hhClassif_an_testing_interactions.do W2
outputs:
moderately_sensitive:
log: logs/20_hhClassif_an_testing_interactions_W2.log
20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath.do MAIN
outputs:
moderately_sensitive:
log: logs/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath_MAIN.log
table: output/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath_MAIN.txt
20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath.do W2
outputs:
moderately_sensitive:
log: logs/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath_W2.log
table: output/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath_W2.txt
20a_SENS_TPP100:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/20a_SENS_TPP100.do MAIN
outputs:
moderately_sensitive:
log: logs/20a_SENS_TPP100_covidHospOrDeath_MAIN.log
table: output/20a_SENS_TPP100_covidHospOrDeath_MAIN.txt
20a_SENS_TPP100_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/20a_SENS_TPP100.do W2
outputs:
moderately_sensitive:
log: logs/20a_SENS_TPP100_covidHospOrDeath_W2.log
table: output/20a_SENS_TPP100_covidHospOrDeath_W2.txt
20a_SENS_BUFFER:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/20a_SENS_BUFFER.do
outputs:
moderately_sensitive:
log: logs/20a_SENS_BUFFER_covidHospOrDeath_MAIN.log
table: output/20a_SENS_BUFFER_covidHospOrDeath_MAIN.txt
20a_SENS_BUFFER_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/20a_SENS_BUFFER.do W2
outputs:
moderately_sensitive:
log: logs/20a_SENS_BUFFER_covidHospOrDeath_W2.log
table: output/20a_SENS_BUFFER_covidHospOrDeath_W2.txt
20a_SENS_SMOKEBMICOMPLETECASE:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/20a_SENS_SMOKEBMICOMPLETECASE.do MAIN
outputs:
moderately_sensitive:
log: logs/20a_SENS_SMOKEBMICOMPLETECASE_covidHospOrDeath_MAIN.log
table: output/20a_SENS_SMOKEBMICOMPLETECASE_covidHospOrDeath_MAIN.txt
20a_SENS_SMOKEBMICOMPLETECASE_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/20a_SENS_SMOKEBMICOMPLETECASE.do W2
outputs:
moderately_sensitive:
log: logs/20a_SENS_SMOKEBMICOMPLETECASE_covidHospOrDeath_W2.log
table: output/20a_SENS_SMOKEBMICOMPLETECASE_covidHospOrDeath_W2.txt
20a_PROPHAZARDS:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/20a_PROPHAZARDS.do MAIN
outputs:
moderately_sensitive:
log: logs/20a_PROPHAZARDS_*_MAIN.log
table: output/20a_PROPHAZARDS_*_MAIN.txt
graph0: output/Kaplin_Meier_*_MAIN.svg
graph1: output/schoenplot_*_univariable_cat_*_MAIN.svg
graph2: output/schoenplot_*_multivariable_cat_*_MAIN.svg
20a_PROPHAZARDS_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/20a_PROPHAZARDS.do W2
outputs:
moderately_sensitive:
log: logs/20a_PROPHAZARDS_*_W2.log
table: output/20a_PROPHAZARDS_*_W2.txt
graph0: output/Kaplin_Meier_*_W2.svg
graph1: output/schoenplot_*_univariable_cat_*_W2.svg
graph2: output/schoenplot_*_multivariable_cat_*_W2.svg
20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath.do MAIN
outputs:
moderately_sensitive:
log: logs/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath_MAIN.log
table: output/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath_MAIN.txt
20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath.do W2
outputs:
moderately_sensitive:
log: logs/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath_W2.log
table: output/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath_W2.txt
20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp.do MAIN
outputs:
moderately_sensitive:
log: logs/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp_MAIN.log
table: output/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp_MAIN.txt
20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp.do W2
outputs:
moderately_sensitive:
log: logs/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp_W2.log
table: output/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp_W2.txt
20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath.do MAIN
outputs:
moderately_sensitive:
log: logs/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath_MAIN.log
table: output/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath_MAIN.txt
20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath.do W2
outputs:
moderately_sensitive:
log: logs/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath_W2.log
table: output/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath_W2.txt
20e_hhClassif_p-values_for_covidHospOrDeath:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/20e_hhClassif_p-values_for_covidHospOrDeath.do MAIN
outputs:
moderately_sensitive:
log: logs/20e_hhClassif_p-values_for_covidHospOrDeath_MAIN.log
20e_hhClassif_p-values_for_covidHospOrDeath_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/20e_hhClassif_p-values_for_covidHospOrDeath.do W2
outputs:
moderately_sensitive:
log: logs/20e_hhClassif_p-values_for_covidHospOrDeath_W2.log
20f_hhClassif_personYearsCorrection:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/20f_hhClassif_personYearsCorrection.do MAIN
outputs:
moderately_sensitive:
log: logs/20f_hhClassif_personYearsCorrection_*_MAIN.log
table: output/20f_hhClassif_personYearsCorrection_*_MAIN.txt
20f_hhClassif_personYearsCorrection_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/20f_hhClassif_personYearsCorrection.do W2
outputs:
moderately_sensitive:
log: logs/20f_hhClassif_personYearsCorrection_*_W2.log
table: output/20f_hhClassif_personYearsCorrection_*_W2.txt
21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6.do MAIN
outputs:
moderately_sensitive:
log1: logs/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6_MAIN.log
# table1: output/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6_MAIN.txt
21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6.do W2
outputs:
moderately_sensitive:
log1: logs/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6_W2.log
# table1: output/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6_MAIN.txt
22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS.do MAIN
outputs:
moderately_sensitive:
log: logs/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS_*_MAIN.log
table: output/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS_*_MAIN.txt
22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS.do W2
outputs:
moderately_sensitive:
log: logs/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS_*_W2.log
table: output/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS_*_W2.txt
23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath.do MAIN
outputs:
moderately_sensitive:
log: logs/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath_MAIN.log
table: output/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath_MAIN.txt
23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath.do W2
outputs:
moderately_sensitive:
log: logs/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath_W2.log
table: output/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath_W2.txt
24_hhClassif_an_AbsoluteRatesKeyVars:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/24_hhClassif_an_AbsoluteRatesKeyVars.do MAIN
outputs:
moderately_sensitive:
# log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
# log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
log3: logs/24_hhClassif_an_AbsoluteRatesKeyVars_covidHospOrDeath_MAIN.log
# log4: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.log
# table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
# table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
table3: output/24_hhClassif_an_AbsoluteRatesKeyVars_covidHospOrDeath_MAIN.txt
# table4: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.txt
24_hhClassif_an_AbsoluteRatesKeyVars_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/24_hhClassif_an_AbsoluteRatesKeyVars.do W2
outputs:
moderately_sensitive:
# log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
# log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
log3: logs/24_hhClassif_an_AbsoluteRatesKeyVars_covidHospOrDeath_W2.log
# log4: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.log
# table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
# table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
table3: output/24_hhClassif_an_AbsoluteRatesKeyVars_covidHospOrDeath_W2.txt
# table4: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.txt
25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI:
needs: [01b_hhClassif_cr_imputed_datasets]
run: stata-mp:latest analysis/25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI.do MAIN
outputs:
moderately_sensitive:
log: logs/25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI_MAIN.log
25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI_W2:
needs: [01b_hhClassif_cr_imputed_datasets_W2]
run: stata-mp:latest analysis/25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI.do W2
outputs:
moderately_sensitive:
log: logs/25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI_W2.log
table: output/25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_W2.txt
25DUMMYONLY_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI:
needs: [01bDUMMYONLY_hhClassif_cr_imputed_datasets]
run: stata-mp:latest analysis/25DUMMYONLY_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI.do MAIN
outputs:
moderately_sensitive:
log: logs/25DUMMYONLY_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MAIN.log
table: output/25DUMMYONLY_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MAIN.txt
26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath.do MAIN
outputs:
moderately_sensitive:
log: logs/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath_MAIN.log
table: output/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath_MAIN.txt
26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath.do W2
outputs:
moderately_sensitive:
log: logs/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath_W2.log
table: output/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath_W2.txt
Timeline
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Created:
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Started:
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Finished:
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Runtime: 12:44:44
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Failed
- Backend
- TPP
- Workspace
- hh-classification-research
- Requested by
- Kevin Wing
- Branch
- master
- Force run dependencies
- No
- Git commit hash
- 66c326c
- Requested actions
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-
generate_cohort
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01_hhClassif_cr_analysis_dataset
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20a_SENS_TPP100
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20a_SENS_BUFFER
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20a_SENS_SMOKEBMICOMPLETECASE
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