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Job request: 6979

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
hh-classification-research
ID:
7eekbsngec4yucaj
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Kevin Wing requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 200000

actions:
  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  W2_generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_W2
    outputs:
      highly_sensitive:
        cohort: output/input_W2.csv

  01_hhClassif_cr_analysis_dataset:
    run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do MAIN
    needs: [generate_cohort]
    outputs:
      highly_sensitive:
        # allHHSizes: output/allHH_beforeDropping_largerThan10_MAIN.dta
        allHHSizes1_20: output/allHH_sizedBetween1And20_MAIN.dta
        allHHSizes1_12Incl: output/allHH_sizedBetween1And12_MAIN.dta
        allvars: output/hhClassif_analysis_datasetMAIN.dta
        allvarsEthMiss: output/hhClassif_analysis_dataset_with_missing_ethnicityMAIN.dta
        allvarsEthMiss2: output/hhClassif_analysis_dataset_with_missing_ethnicity_ageband_*MAIN.dta
        allVarsAgeSpline: output/hhClassif_analysis_dataset_ageband_*MAIN.dta 
        allVarsAgeStratStset: output/hhClassif_analysis_dataset_STSET_*_ageband_*MAIN.dta 
      moderately_sensitive:
        log: logs/01_hhClassif_cr_analysis_dataset.log

  01_hhClassif_cr_analysis_dataset_W2:
    run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do W2
    needs: [W2_generate_cohort]
    outputs:
      highly_sensitive:
        # allHHSizes: output/allHH_beforeDropping_largerThan10_W2.dta
        allHHSizes1_12Incl: output/allHH_sizedBetween1And12_W2.dta
        allHHSizes1_20: output/allHH_sizedBetween1And20_W2.dta
        allvars: output/hhClassif_analysis_datasetW2.dta
        allvarsEthMiss: output/hhClassif_analysis_dataset_with_missing_ethnicityW2.dta
        allvarsEthMiss2: output/hhClassif_analysis_dataset_with_missing_ethnicity_ageband_*W2.dta
        allVarsAgeSpline: output/hhClassif_analysis_dataset_ageband_*W2.dta 
        allVarsAgeStratStset: output/hhClassif_analysis_dataset_STSET_*_ageband_*W2.dta 
      moderately_sensitive:
        log: logs/01_hhClassif_cr_analysis_dataset_W2.log


  01b_hhClassif_cr_imputed_datasets:
    run: stata-mp:latest analysis/01b_hhClassif_cr_imputed_datasets.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      highly_sensitive:
        imputedEthnicity: output/hhClassif_analysis_dataset_eth5_mi_ageband_*_STSET_*_MAIN.dta
      moderately_sensitive:
        log: logs/01b_hhClassif_imputed_datasets_MAIN.log


  01b_hhClassif_cr_imputed_datasets_W2:
    run: stata-mp:latest analysis/01b_hhClassif_cr_imputed_datasets.do W2
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    outputs:
      highly_sensitive:
        imputedEthnicity: output/hhClassif_analysis_dataset_eth5_mi_ageband_*_STSET_*_W2.dta
      moderately_sensitive:
        log: logs/01b_hhClassif_imputed_datasets_W2.log


  01bDUMMYONLY_hhClassif_cr_imputed_datasets:
    run: stata-mp:latest analysis/01bDUMMYONLY_hhClassif_cr_imputed_datasets.do
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      highly_sensitive:
        imputedEthnicity: output/hhClassif_analysis_dataset_eth5_mi_ageband_3_STSET_covidHospOrDeathCase_DUMMYONLY_MAIN.dta
      moderately_sensitive:
        log: logs/01b_hhClassif_imputed_datasets_DUMMYONLY.log


  01c_SensAnalysis_Age60_hhClassif_cr_analysis_dataset_W2:
    run: stata-mp:latest analysis/01c_SensAnalysis1_Age60_hhClassif_cr_analysis_dataset.do W2
    needs: [W2_generate_cohort]
    outputs:
      highly_sensitive:
        allvars: output/SensAnalysis1_Age60_datasetW2.dta
        allVarsAgeSpline: output/SensAnalysis1_Age60_dataset_ageband_*W2.dta 
        allVarsAgeStratStset: output/SensAnalysis1_Age60_dataset_STSET_*_ageband_*W2.dta 
      moderately_sensitive:
        log: logs/01c_SensAnalysis1_Age60_hhClassif_cr_analysis_dataset_W2.log

  02_hhClassif_an_data_checks:
    run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/02_hhClassif_an_data_checks.log

  02_hhClassif_an_data_checks_W2:
    run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do W2
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    outputs:
      moderately_sensitive:
        log: logs/02_hhClassif_an_data_checks_W2.log

  02b_hhClassif_an_checking_hhVars:
    run: stata-mp:latest analysis/02b_hhClassif_an_checking_hhVars.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/02b_hhClassif_an_checking_hhVars_MAIN.log
        #table: output/02b_hhClassif_an_checking_hhVars_MAIN.txt

  02b_hhClassif_an_checking_hhVars_W2:
    run: stata-mp:latest analysis/02b_hhClassif_an_checking_hhVars.do W2
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    outputs:
      moderately_sensitive:
        log: logs/02b_hhClassif_an_checking_hhVars_W2.log
        #table: output/02b_hhClassif_an_checking_hhVars_W2.txt

  03a_hhClassif_an_hist_hhSizebyEthnicity:
    run: stata-mp:latest analysis/03a_hhClassif_an_hist_hhSizebyEthnicity.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/03a_hhClassif_an_hist_hhSizebyEthnicity_MAIN.log
        gph1: output/overallHHSizeDist_MAIN.gph 
        gph2: output/whiteHHSizeDist_MAIN.gph 
        gph3: output/southAsianHHSizeDist_MAIN.gph
        gph4: output/blackHHSizeDist_MAIN.gph
        gph5: output/HHdistHists_MAIN.pdf

  03b_hhClassif_an_hist_ov65hhSizebyEthnicity:
    run: stata-mp:latest analysis/03b_hhClassif_an_hist_ov65hhSizebyEthnicity.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/03b_hhClassif_an_hist_ov65hhSizebyEthnicity_MAIN.log
        gph1: output/ov65OverallHHSizeDist_MAIN.gph 
        gph2: output/ov65WhiteHHSizeDist_MAIN.gph 
        gph3: output/ov65SouthAsianHHSizeDist_MAIN.gph
        gph4: output/ov65BlackHHSizeDist_MAIN.gph
        gph5: output/ov65HHdistHists_MAIN.pdf

  03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge:
    run: stata-mp:latest analysis/03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      highly_sensitive:
        over65OnlyHH: output/housesWithOnly65yrOldsInThem_MAIN.dta
      moderately_sensitive:
        log: logs/03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge_MAIN.log
        gph1: output/ov65OverallHHSizeDist_woAllSameAge_MAIN.gph 
        gph2: output/ov65WhiteHHSizeDist_woAllSameAge_MAIN.gph 
        gph3: output/ov65SouthAsianHHSizeDist_woAllSameAge_MAIN.gph
        gph4: output/ov65BlackHHSizeDist_woAllSameAge_MAIN.gph
        gph5: output/ov65HHdistHists_woAllSameAge_MAIN.pdf

  03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban:
    run: stata-mp:latest analysis/03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban_MAIN.log
        gph1: output/ov65OverallHHSizeDist_*_MAIN.gph 
        gph2: output/ov65WhiteHHSizeDist_*_MAIN.gph 
        gph3: output/ov65SouthAsianHHSizeDist_*_MAIN.gph
        gph4: output/ov65BlackHHSizeDist_*_MAIN.gph
        gph5: output/ov65HHdistHists_*_MAIN.pdf

  03e_hhClassif_an_descriptive_table_1:
    run: stata-mp:latest analysis/03e_hhClassif_an_descriptive_table_1.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/03e_hhClassif_an_descriptive_table_1_MAIN.log
        tableTxt: output/table1_hhClassifMAIN.txt
        # log: logs/03e_hhClassif_hhComp_vs_hhSize_MAIN.log
       

  03e_hhClassif_an_descriptive_table_1_W2:
    run: stata-mp:latest analysis/03e_hhClassif_an_descriptive_table_1.do W2
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    outputs:
      moderately_sensitive:
        log: logs/03e_hhClassif_an_descriptive_table_1_W2.log
        tableTxt: output/table1_hhClassifW2.txt
        # log: logs/03e_hhClassif_hhComp_vs_hhSize_W2.log
      

  03f_hhClassif_an_descriptive_table_1_sepEthnicities:
    run: stata-mp:latest analysis/03f_hhClassif_an_descriptive_table_1_sepEthnicities.do MAIN
    needs: [01_hhClassif_cr_analysis_dataset]
    outputs:
      moderately_sensitive:
        log: logs/03f_hhClassif_an_descriptive_table_1_sepEthnicities_MAIN.log
        tableTxt: output/table1_hhClassif_byEthnicityMAIN.txt
      

  03f_hhClassif_an_descriptive_table_1_sepEthnicities_W2:
    run: stata-mp:latest analysis/03f_hhClassif_an_descriptive_table_1_sepEthnicities.do W2
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    outputs:
      moderately_sensitive:
        log: logs/03f_hhClassif_an_descriptive_table_1_sepEthnicities_W2.log
        tableTxt: output/table1_hhClassif_byEthnicityW2.txt
      

  04_hhClassif_an_univariable_analysis:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/04_hhClassif_an_univariable_analysis.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/04_hhClassif_an_univariable_analysis_MAIN.log
        data: output/hhClassif_univariableAnalysis_*_ageband_*MAIN.ster

  04_hhClassif_an_univariable_analysis_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/04_hhClassif_an_univariable_analysis.do W2
    outputs:
      moderately_sensitive:
        log: logs/04_hhClassif_an_univariable_analysis_W2.log
        data: output/hhClassif_univariableAnalysis_*_ageband_*W2.ster

  05_hhClassif_an_multivariable_analysis:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/05_hhClassif_an_multivariable_analysis.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/05_hhClassif_an_multivariable_analysis_MAIN.log
        data: output/hhClassif_multivariableAllEthnicities_*_ageband_*MAIN.ster

  05_hhClassif_an_multivariable_analysis_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/05_hhClassif_an_multivariable_analysis.do W2
    outputs:
      moderately_sensitive:
        log: logs/05_hhClassif_an_multivariable_analysis_W2.log
        data: output/hhClassif_multivariableAllEthnicities_*_ageband_*W2.ster

  06_hhClassif_an_multivariable_analysis_eth5Interaction:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/06_hhClassif_an_multivariable_analysis_eth5Interaction.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/06_hhClassif_an_eth5Interaction_analysis_MAIN.log

  06_hhClassif_an_multivariable_analysis_eth5Interaction_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/06_hhClassif_an_multivariable_analysis_eth5Interaction.do W2
    outputs:
      moderately_sensitive:
        log: logs/06_hhClassif_an_eth5Interaction_analysis_W2.log

  07_hhClassif_an_multivariable_analysis_perEth5Group:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/07_hhClassif_an_multivariable_analysis_perEth5Group.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/07_hhClassif_an_multivariable_analysis_perEth5Group_MAIN.log
        data: output/hhClassif_multvariableAnalysisPerEth5_*_ageband_*_ethnicity_*MAIN.ster

  07_hhClassif_an_multivariable_analysis_perEth5Group_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/07_hhClassif_an_multivariable_analysis_perEth5Group.do W2
    outputs:
      moderately_sensitive:
        log: logs/07_hhClassif_an_multivariable_analysis_perEth5Group_W2.log
        data: output/hhClassif_multvariableAnalysisPerEth5_*_ageband_*_ethnicity_*W2.ster

  08_hhClassif_an_mv_analysis_perEth5Group_HR_table:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/08_hhClassif_an_mv_analysis_perEth5Group_HR_table.do MAIN
    outputs:
      moderately_sensitive:
        log1: logs/08_hhClassif_tablecontent_HRtable_covidDeath_MAIN.log
        log2: logs/08_hhClassif_tablecontent_HRtable_covidHosp_MAIN.log
        log3: logs/08_hhClassif_tablecontent_HRtable_covidHospOrDeath_MAIN.log
        log4: logs/08_hhClassif_tablecontent_HRtable_nonCovidDeath_MAIN.log
        table1: output/hhClassif_tablecontents_HRtable_covidDeath_MAIN.txt
        table2: output/hhClassif_tablecontents_HRtable_covidHosp_MAIN.txt
        table3: output/hhClassif_tablecontents_HRtable_covidHospOrDeath_MAIN.txt
        table4: output/hhClassif_tablecontents_HRtable_nonCovidDeath_MAIN.txt


  08_hhClassif_an_mv_analysis_perEth5Group_HR_table_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/08_hhClassif_an_mv_analysis_perEth5Group_HR_table.do W2
    outputs:
      moderately_sensitive:
        log1: logs/08_hhClassif_tablecontent_HRtable_covidDeath_W2.log
        log2: logs/08_hhClassif_tablecontent_HRtable_covidHosp_W2.log
        log3: logs/08_hhClassif_tablecontent_HRtable_covidHospOrDeath_W2.log
        log4: logs/08_hhClassif_tablecontent_HRtable_nonCovidDeath_W2.log
        table1: output/hhClassif_tablecontents_HRtable_covidDeath_W2.txt
        table2: output/hhClassif_tablecontents_HRtable_covidHosp_W2.txt
        table3: output/hhClassif_tablecontents_HRtable_covidHospOrDeath_W2.txt
        table4: output/hhClassif_tablecontents_HRtable_nonCovidDeath_W2.txt

  09_hhClassif_an_mv_analysis_perEth16Group_HR_table:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/09_hhClassif_an_mv_analysis_perEth16Group_HR_table.do MAIN
    outputs:
      moderately_sensitive:
        # log1: logs/09_hhClassif_tablecontent_HRtable_eth16_covidDeath_MAIN.log
        # log2: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHosp_MAIN.log
        log3: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHospOrDeath_MAIN.log
        # log4: logs/09_hhClassif_tablecontent_HRtable_eth16_nonCovidDeath_MAIN.log
        # table1: output/hhClassif_tablecontents_HRtable_eth16_covidDeath_MAIN.txt
        # table2: output/hhClassif_tablecontents_HRtable_eth16_covidHosp_MAIN.txt
        table3: output/hhClassif_tablecontents_HRtable_eth16_covidHospOrDeath_MAIN.txt
        # table4: output/hhClassif_tablecontents_HRtable_eth16_nonCovidDeath_MAIN.txt


  09_hhClassif_an_mv_analysis_perEth16Group_HR_table_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/09_hhClassif_an_mv_analysis_perEth16Group_HR_table.do W2
    outputs:
      moderately_sensitive:
        # log1: logs/09_hhClassif_tablecontent_HRtable_eth16_covidDeath_W2.log
        # log2: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHosp_W2.log
        log3: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHospOrDeath_W2.log
        # log4: logs/09_hhClassif_tablecontent_HRtable_eth16_nonCovidDeath_W2.log
        # table1: output/hhClassif_tablecontents_HRtable_eth16_covidDeath_W2.txt
        # table2: output/hhClassif_tablecontents_HRtable_eth16_covidHosp_W2.txt
        table3: output/hhClassif_tablecontents_HRtable_eth16_covidHospOrDeath_W2.txt
        # table4: output/hhClassif_tablecontents_HRtable_eth16_nonCovidDeath_W2.txt

  10_hh_imd_descriptives_for_Hamish_W1:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/10_hh_imd_descriptives_for_Hamish_W1.do
    outputs:
      moderately_sensitive:
        log: logs/10_hh_imd_descriptives_for_Hamish_W1.log
        # table: output/table_ethnicity_descriptivesMAIN.txt

  11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable.do MAIN
    outputs:
      moderately_sensitive:
        # log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
        # log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
        log3: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHospOrDeath_MAIN.log
        # log4: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_nonCovidDeath_MAIN.log
        # table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
        # table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
        # table3: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHospOrDeath_MAIN.txt
        # table4: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_nonCovidDeath_MAIN.txt

  11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/11_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtable.do W2
    outputs:
      moderately_sensitive:
        # log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_W2.log
        # log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_W2.log
          log3: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHospOrDeath_W2.log
        # log4: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_nonCovidDeath_W2.log
        # table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_W2.txt
        # table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_W2.txt
        # table3: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHospOrDeath_W2.txt
        # table4: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_nonCovidDeath_W2.txt

  11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS.do MAIN
    outputs:
      moderately_sensitive:
        # log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
        # log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
        # log3: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_covidHospOrDeath_MAIN.log
        log4: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_nonCovidDeath_MAIN.log
        # table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
        # table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
        # table3: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_covidHospOrDeath_MAIN.txt
        table4: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_nonCovidDeath_MAIN.txt

  11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/11b_hhClassif_an_mv_perEth5Group_HR_3CATSFULLMVtableAGECATS.do W2
    outputs:
      moderately_sensitive:
        # log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
        # log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
        # log3: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_covidHospOrDeath_W2.log
        log4: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.log
        # table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
        # table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
        # table3: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_covidHospOrDeath_W2.txt
        table4: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.txt

  12_hhClassif_an_MV_analysis_W_SA_multipleInteractions:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/12_hhClassif_an_MV_analysis_W_SA_multipleInteractions.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/12_hhClassif_an_MV_analysis_W_SA_multipleinteractions_MAIN.log

  12_hhClassif_an_MV_analysis_W_SA_multipleinteractions_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/12_hhClassif_an_MV_analysis_W_SA_multipleInteractions.do W2
    outputs:
      moderately_sensitive:
        log: logs/12_hhClassif_an_MV_analysis_W_SA_multipleinteractions_W2.log

  13_hhClassif_an_MV_analysis_test_for_trend:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/13_hhClassif_an_MV_analysis_test_for_trend.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/13_hhClassif_an_MV_analysis_test_for_trend_MAIN.log

  13_hhClassif_an_MV_analysis_test_for_trend_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/13_hhClassif_an_MV_analysis_test_for_trend.do W2
    outputs:
      moderately_sensitive:
        log: logs/13_hhClassif_an_MV_analysis_test_for_trend_W2.log

  14_hhClassif_an_MV_analyses_p_values_for_var_associations:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/14_hhClassif_an_MV_analyses_p_values_for_var_associations.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/14_hhClassif_an_MV_analyses_p_values_for_var_associations_MAIN.log

  14_hhClassif_an_MV_analyses_p_values_for_var_associations_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/14_hhClassif_an_MV_analyses_p_values_for_var_associations.do W2
    outputs:
      moderately_sensitive:
        log: logs/14_hhClassif_an_MV_analyses_p_values_for_var_associations_W2.log

  15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot.do MAIN
    outputs:
      moderately_sensitive:
        log1: logs/15_hhClassif_forForestPlot_covidDeath_MAIN.log
        log2: logs/15_hhClassif_forForestPlot_covidHosp_MAIN.log
        log3: logs/15_hhClassif_forForestPlot_covidHospOrDeath_MAIN.log
        log4: logs/15_hhClassif_forForestPlot_nonCovidDeath_MAIN.log
        table1: output/15_hhClassif_forForestPlot_covidDeath_MAIN.txt
        table2: output/15_hhClassif_forForestPlot_covidHosp_MAIN.txt
        table3: output/15_hhClassif_forForestPlot_covidHospOrDeath_MAIN.txt
        table4: output/15_hhClassif_forForestPlot_nonCovidDeath_MAIN.txt


  15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/15_hhClassif_an_mv_analysis_perEth5Group_forForestPlot.do W2
    outputs:
      moderately_sensitive:
        log1: logs/15_hhClassif_forForestPlot_covidDeath_W2.log
        log2: logs/15_hhClassif_forForestPlot_covidHosp_W2.log
        log3: logs/15_hhClassif_forForestPlot_covidHospOrDeath_W2.log
        log4: logs/15_hhClassif_forForestPlot_nonCovidDeath_W2.log
        table1: output/15_hhClassif_forForestPlot_covidDeath_W2.txt
        table2: output/15_hhClassif_forForestPlot_covidHosp_W2.txt
        table3: output/15_hhClassif_forForestPlot_covidHospOrDeath_W2.txt
        table4: output/15_hhClassif_forForestPlot_nonCovidDeath_W2.txt


  16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot.do MAIN
    outputs:
      moderately_sensitive:
        log1: logs/16_hhClassif_forForestPlot_covidHospOrDeath_MAIN.log
        table1: output/16_hhClassif_forForestPlot_covidHospOrDeath_MAIN.txt

  16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/16_hhClassif_an_mv_analysis_perEth16Group_forForestPlot.do W2
    outputs:
      moderately_sensitive:
        log1: logs/16_hhClassif_forForestPlot_covidHospOrDeath_W2.log
        table1: output/16_hhClassif_forForestPlot_covidHospOrDeath_W2.txt

  17_SensAnalysis_Age60_mv_analysis_perEth5Group_HR_table_W2:
    needs: [01c_SensAnalysis_Age60_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/17_SensAnalysis_Age60_mv_analysis_perEth5Group_HR_table.do W2
    outputs:
      moderately_sensitive:
        log: logs/17_SensAnalysis_Age60_mv_analysis_perEth5Group_HR_table_covidHospOrDeath_W2.log
        table: output/17_SensAnalysis_Age60_mv_analysis_perEth5Group_HR_table_covidHospOrDeath_W2.txt

  18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table.do MAIN
    outputs:
      moderately_sensitive:
        log1: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidDeath_MAIN.log
        log2: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHosp_MAIN.log
        log3: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHospOrDeath_MAIN.log
        log4: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_nonCovidDeath_MAIN.log
        table1: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidDeath_MAIN.txt
        table2: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHosp_MAIN.txt
        table3: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHospOrDeath_MAIN.txt
        table4: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_nonCovidDeath_MAIN.txt

  18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table.do W2
    outputs:
      moderately_sensitive:
        log1: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidDeath_W2.log
        log2: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHosp_W2.log
        log3: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHospOrDeath_W2.log
        log4: logs/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_nonCovidDeath_W2.log
        table1: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidDeath_W2.txt
        table2: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHosp_W2.txt
        table3: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_covidHospOrDeath_W2.txt
        table4: output/18_hhClassif_an_mv_analysis_perEth5Group_67SEPARATED_HR_table_nonCovidDeath_W2.txt

  19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table.do MAIN
    outputs:
      moderately_sensitive:
        log1: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidDeath_MAIN.log
        log2: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHosp_MAIN.log
        log3: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHospOrDeath_MAIN.log
        log4: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_nonCovidDeath_MAIN.log
        table1: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidDeath_MAIN.txt
        table2: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHosp_MAIN.txt
        table3: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHospOrDeath_MAIN.txt
        table4: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_nonCovidDeath_MAIN.txt

  19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table.do W2
    outputs:
      moderately_sensitive:
        #log1: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidDeath_W2.log
        #log2: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHosp_W2.log
        log3: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHospOrDeath_W2.log
        #log4: logs/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_nonCovidDeath_W2.log
        #table1: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidDeath_W2.txt
        #table2: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHosp_W2.txt
        table3: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_covidHospOrDeath_W2.txt
        #table4: output/19_hhClassifCompSizeExp_an_mv_analysis_perEth5_HR_table_nonCovidDeath_W2.txt

  19b_hhClassif_p-values_for_compSizeExp_covidHospOrDeath_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/19b_hhClassif_p-values_for_compSizeExp_covidHospOrDeath.do W2
    outputs:
      moderately_sensitive:
        log: logs/19b_hhClassif_p-values_compSizeExp_covidHospOrDeath_W2.log

  20_hhClassif_an_testing_interactions:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/20_hhClassif_an_testing_interactions.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/20_hhClassif_an_testing_interactions_MAIN.log

  20_hhClassif_an_testing_interactions_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/20_hhClassif_an_testing_interactions.do W2
    outputs:
      moderately_sensitive:
        log: logs/20_hhClassif_an_testing_interactions_W2.log

  20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath_MAIN.log
        table: output/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath_MAIN.txt

  20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath.do W2
    outputs:
      moderately_sensitive:
        log: logs/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath_W2.log
        table: output/20a_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHospOrDeath_W2.txt

  20a_SENS_TPP100:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/20a_SENS_TPP100.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/20a_SENS_TPP100_covidHospOrDeath_MAIN.log
        table: output/20a_SENS_TPP100_covidHospOrDeath_MAIN.txt

  20a_SENS_TPP100_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/20a_SENS_TPP100.do W2
    outputs:
      moderately_sensitive:
        log: logs/20a_SENS_TPP100_covidHospOrDeath_W2.log
        table: output/20a_SENS_TPP100_covidHospOrDeath_W2.txt

  20a_SENS_BUFFER:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/20a_SENS_BUFFER.do
    outputs:
      moderately_sensitive:
        log: logs/20a_SENS_BUFFER_covidHospOrDeath_MAIN.log
        table: output/20a_SENS_BUFFER_covidHospOrDeath_MAIN.txt

  20a_SENS_BUFFER_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/20a_SENS_BUFFER.do W2
    outputs:
      moderately_sensitive:
        log: logs/20a_SENS_BUFFER_covidHospOrDeath_W2.log
        table: output/20a_SENS_BUFFER_covidHospOrDeath_W2.txt

  20a_SENS_SMOKEBMICOMPLETECASE:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/20a_SENS_SMOKEBMICOMPLETECASE.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/20a_SENS_SMOKEBMICOMPLETECASE_covidHospOrDeath_MAIN.log
        table: output/20a_SENS_SMOKEBMICOMPLETECASE_covidHospOrDeath_MAIN.txt

  20a_SENS_SMOKEBMICOMPLETECASE_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/20a_SENS_SMOKEBMICOMPLETECASE.do W2
    outputs:
      moderately_sensitive:
        log: logs/20a_SENS_SMOKEBMICOMPLETECASE_covidHospOrDeath_W2.log
        table: output/20a_SENS_SMOKEBMICOMPLETECASE_covidHospOrDeath_W2.txt

  20a_PROPHAZARDS:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/20a_PROPHAZARDS.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/20a_PROPHAZARDS_*_MAIN.log
        table: output/20a_PROPHAZARDS_*_MAIN.txt
        graph0: output/Kaplin_Meier_*_MAIN.svg
        graph1: output/schoenplot_*_univariable_cat_*_MAIN.svg
        graph2: output/schoenplot_*_multivariable_cat_*_MAIN.svg

  20a_PROPHAZARDS_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/20a_PROPHAZARDS.do W2
    outputs:
      moderately_sensitive:
        log: logs/20a_PROPHAZARDS_*_W2.log
        table: output/20a_PROPHAZARDS_*_W2.txt
        graph0: output/Kaplin_Meier_*_W2.svg
        graph1: output/schoenplot_*_univariable_cat_*_W2.svg
        graph2: output/schoenplot_*_multivariable_cat_*_W2.svg

  20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath_MAIN.log
        table: output/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath_MAIN.txt

  20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath.do W2
    outputs:
      moderately_sensitive:
        log: logs/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath_W2.log
        table: output/20b_hhClassif_an_mv_an_wInteractions_67alone_HR_covidDeath_W2.txt

  20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp_MAIN.log
        table: output/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp_MAIN.txt

  20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp.do W2
    outputs:
      moderately_sensitive:
        log: logs/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp_W2.log
        table: output/20c_hhClassif_an_mv_an_wInteractions_67alone_HR_covidHosp_W2.txt
  
  20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath_MAIN.log
        table: output/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath_MAIN.txt

  20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath.do W2
    outputs:
      moderately_sensitive:
        log: logs/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath_W2.log
        table: output/20d_hhClassif_an_mv_an_wInteractions_67alone_HR_nonCovidDeath_W2.txt

  20e_hhClassif_p-values_for_covidHospOrDeath:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/20e_hhClassif_p-values_for_covidHospOrDeath.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/20e_hhClassif_p-values_for_covidHospOrDeath_MAIN.log

  20e_hhClassif_p-values_for_covidHospOrDeath_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/20e_hhClassif_p-values_for_covidHospOrDeath.do W2
    outputs:
      moderately_sensitive:
        log: logs/20e_hhClassif_p-values_for_covidHospOrDeath_W2.log

  20f_hhClassif_personYearsCorrection:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/20f_hhClassif_personYearsCorrection.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/20f_hhClassif_personYearsCorrection_*_MAIN.log
        table: output/20f_hhClassif_personYearsCorrection_*_MAIN.txt

  20f_hhClassif_personYearsCorrection_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/20f_hhClassif_personYearsCorrection.do W2
    outputs:
      moderately_sensitive:
        log: logs/20f_hhClassif_personYearsCorrection_*_W2.log
        table: output/20f_hhClassif_personYearsCorrection_*_W2.txt

  21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6.do MAIN
    outputs:
      moderately_sensitive:
        log1: logs/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6_MAIN.log
        # table1: output/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6_MAIN.txt

  21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6.do W2
    outputs:
      moderately_sensitive:
        log1: logs/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6_W2.log
        # table1: output/21_hhClassif_an_67SEPARATED_SizevsGens_Table_S6_MAIN.txt


  22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS_*_MAIN.log
        table: output/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS_*_MAIN.txt

  22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS.do W2
    outputs:
      moderately_sensitive:
        log: logs/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS_*_W2.log
        table: output/22_hhClassif_an_mv_an_wInteractions_67alone_HR_ALLVARS_*_W2.txt


  23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath_MAIN.log
        table: output/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath_MAIN.txt


  23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath.do W2
    outputs:
      moderately_sensitive:
        log: logs/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath_W2.log
        table: output/23_hhClassif_an_mv_analysis_ethnicity_16wInteractions_67alone_HR_covidHospOrDeath_W2.txt

  24_hhClassif_an_AbsoluteRatesKeyVars:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/24_hhClassif_an_AbsoluteRatesKeyVars.do MAIN
    outputs:
      moderately_sensitive:
        # log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
        # log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
        log3: logs/24_hhClassif_an_AbsoluteRatesKeyVars_covidHospOrDeath_MAIN.log
        # log4: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.log
        # table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
        # table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
        table3: output/24_hhClassif_an_AbsoluteRatesKeyVars_covidHospOrDeath_MAIN.txt
        # table4: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.txt

  24_hhClassif_an_AbsoluteRatesKeyVars_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/24_hhClassif_an_AbsoluteRatesKeyVars.do W2
    outputs:
      moderately_sensitive:
        # log1: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidDeath_MAIN.log
        # log2: logs/hhClassif_tablecontent_HR_3CATSFULLMVtable_covidHosp_MAIN.log
        log3: logs/24_hhClassif_an_AbsoluteRatesKeyVars_covidHospOrDeath_W2.log
        # log4: logs/11b_hhClassif_tablecontent_HR_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.log
        # table1: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidDeath_MAIN.txt
        # table2: output/hhClassif_tablecontents_HRtable_3CATSFULLMVtable_covidHosp_MAIN.txt
        table3: output/24_hhClassif_an_AbsoluteRatesKeyVars_covidHospOrDeath_W2.txt
        # table4: output/11b_hhClassif_tablecontents_HRtable_3CATSFULLMVtableAGECATS_nonCovidDeath_W2.txt

  25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI:
    needs: [01b_hhClassif_cr_imputed_datasets]
    run: stata-mp:latest analysis/25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI_MAIN.log

  25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI_W2:
    needs: [01b_hhClassif_cr_imputed_datasets_W2]
    run: stata-mp:latest analysis/25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI.do W2
    outputs:
      moderately_sensitive:
        log: logs/25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI_W2.log
        table: output/25_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_W2.txt


  25DUMMYONLY_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI:
    needs: [01bDUMMYONLY_hhClassif_cr_imputed_datasets]
    run: stata-mp:latest analysis/25DUMMYONLY_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MI.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/25DUMMYONLY_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MAIN.log
        table: output/25DUMMYONLY_hhClassif_an_mv_an_wInteractions_67alone_covidHospOrDeath_MAIN.txt


  26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath:
    needs: [01_hhClassif_cr_analysis_dataset]
    run: stata-mp:latest analysis/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath.do MAIN
    outputs:
      moderately_sensitive:
        log: logs/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath_MAIN.log
        table: output/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath_MAIN.txt


  26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath_W2:
    needs: [01_hhClassif_cr_analysis_dataset_W2]
    run: stata-mp:latest analysis/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath.do W2
    outputs:
      moderately_sensitive:
        log: logs/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath_W2.log
        table: output/26_hhClassif_an_mv_an_wInteractions_9categories_HR_covidHospOrDeath_W2.txt

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 12:44:44

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Workspace
hh-classification-research
Requested by
Kevin Wing
Branch
master
Force run dependencies
No
Git commit hash
66c326c
Requested actions
  • generate_cohort
  • 01_hhClassif_cr_analysis_dataset
  • 20a_SENS_TPP100
  • 20a_SENS_BUFFER
  • 20a_SENS_SMOKEBMICOMPLETECASE