Job request: 221
- Organisation:
- The London School of Hygiene & Tropical Medicine
- Workspace:
- households
- ID:
- bryky5srizhjqdfj
This page shows the technical details of what happened when authorised researcher Seb Bacon requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
2zqpxgaxivs6plq6-manually-set
Pipeline
Show project.yaml
version: "1.0"
actions:
generate_cohort:
run: cohortextractor:latest generate_cohort --output-dir=/workspace
outputs:
highly_sensitive:
cohort: input.csv
prepare_data:
run: stata-mp:latest analysis/01_hh_cr_analysis_dataset.do
needs: [generate_cohort]
outputs:
highly_sensitive:
allvars: hh_analysis_datasetALLVARS.dta
redvars: hh_analysis_datasetREDVARS.dta
descriptive_notebook:
run: jupyter:latest jupyter nbconvert /workspace/analysis/opensafely_eda_test_notebook.ipynb --execute --to html --output-dir=/workspace --ExecutePreprocessor.timeout=86400
needs: [prepare_data]
outputs:
moderately_sensitive:
notebook: opensafely_eda_test_notebook.html
ages: analysis/ages.png
hhsize: analysis/hh_sizes.png
cases: analysis/hh_cases_*.png
run: jupyter:latest jupyter nbconvert /workspace/analysis/opensafely_age_hh.ipynb --execute --to html --output-dir=/workspace --ExecutePreprocessor.timeout=86400
needs: [prepare_data]
outputs:
moderately_sensitive:
notebook: opensafely_age_hh.html
notebook_log: analysis/opensafely_age_hh.log
vo_test:
run: python:latest python analysis/fit_vo.py 20
needs: []
outputs:
moderately_sensitive:
vo: vo.txt
os_test:
run: python:latest python analysis/opensafely_age_hh.py
needs: [prepare_data]
outputs:
moderately_sensitive:
log: opensafely_age_hh.log
Timeline
-
Created:
-
Started:
-
Runtime:
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Failed
- Backend
- TPP
- Workspace
- households
- Requested by
- Seb Bacon
- Branch
- master
- Force run dependencies
- No
- Git commit hash
- d2b03ea
- Requested actions
-
-
os_test
-
Code comparison
Compare the code used in this Job Request