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Job request: 2911

Organisation:
Bennett Institute
Workspace:
immunosuppressant-meds-research
ID:
m6xgx5yhq5v2up3e
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Nick Kennedy requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    run_cox_models_standjaki
    Status:
    Succeeded
    Job identifier:
    fh7mhcwhkgzrmx7z
  • Action:
    run_cox_models_imiddrugcategory
    Status:
    Succeeded
    Job identifier:
    fjxhlukihtlzzovg
  • Action:
    run_cox_models_standinflix
    Status:
    Succeeded
    Job identifier:
    3t4g5anxezy4u2qw
  • Action:
    run_cox_models_standil23
    Status:
    Succeeded
    Job identifier:
    zpxssa2ncfmcjdwo
  • Action:
    run_cox_models_skin
    Status:
    Succeeded
    Job identifier:
    yvpgi2747epederx
  • Action:
    run_cox_models_tnfmono
    Status:
    Succeeded
    Job identifier:
    ycrtap6sbnumme2g
  • Action:
    run_cox_models_imid
    Status:
    Succeeded
    Job identifier:
    6mw7pn7ttklklkcv
  • Action:
    run_cox_models_bowel
    Status:
    Failed
    Job identifier:
    knzuewif4ilcjs6k
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    run_cox_models_standritux
    Status:
    Failed
    Job identifier:
    ymeesezis2zr43lj
    Error:
    No outputs found matching patterns: - output/data/cox_model_summary_haemonc_standritux.dta
  • Action:
    run_cox_models_standil17
    Status:
    Failed
    Job identifier:
    dk3nyuiuaguqd36n
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    run_cox_models_joint
    Status:
    Succeeded
    Job identifier:
    qkql5d72skrqeept
  • Action:
    run_cox_models_standil6
    Status:
    Succeeded
    Job identifier:
    tlewoqdb7kidylzo
  • Action:
    run_cox_models_standtnf3m
    Status:
    Succeeded
    Job identifier:
    37cexenotu3ulxjq
  • Action:
    run_cox_models_standtnf
    Status:
    Succeeded
    Job identifier:
    hvdepycxvkbb2rlo
  • Action:
    run_extract_n_subjects
    Status:
    Failed
    Job identifier:
    m5afikndaruhpkjm
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    run_forest_plots
    Status:
    Failed
    Job identifier:
    dxuaoo3pezwmxpsd
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    run_export_csv
    Status:
    Failed
    Job identifier:
    wvhrg2ayoiziiszv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    run_schoenfeld
    Status:
    Failed
    Job identifier:
    mxxlwxg3mlyxxzzk
    Error:
    Internal error when starting job

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 290:21:42

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
immunosuppressant-meds-research
Requested by
Nick Kennedy
Branch
master
Force run dependencies
No
Git commit hash
144c4f9
Requested actions
  • run_cox_models_imid
  • run_cox_models_joint
  • run_cox_models_skin
  • run_cox_models_bowel
  • run_cox_models_imiddrugcategory
  • run_cox_models_standtnf
  • run_cox_models_standtnf3m
  • run_cox_models_tnfmono
  • run_cox_models_standil6
  • run_cox_models_standil17
  • run_cox_models_standil23
  • run_cox_models_standjaki
  • run_cox_models_standritux
  • run_cox_models_standinflix
  • run_schoenfeld
  • run_export_csv
  • run_forest_plots
  • run_extract_n_subjects

Code comparison

Compare the code used in this job request