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Job request: 3235

Organisation:
Bennett Institute
Workspace:
immunosuppressant-meds-research
ID:
c67reqbskynxnyl3
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Nick Kennedy requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    run_cox_spline_standil23
    Status:
    Succeeded
    Job identifier:
    gzxifqgdona5o7l7
  • Action:
    run_cox_spline_tnfmono
    Status:
    Failed
    Job identifier:
    h5qwhzadlcfrzc7o
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    run_cox_spline_imid
    Status:
    Succeeded
    Job identifier:
    h2y477djv3hlacwy
  • Action:
    run_cox_spline_imiddrugcategory
    Status:
    Succeeded
    Job identifier:
    r6bhf74m2f6lte77
  • Action:
    run_cox_spline_standil17
    Status:
    Succeeded
    Job identifier:
    4qwhcgle7tzvb7bg
  • Action:
    run_cox_spline_standritux
    Status:
    Succeeded
    Job identifier:
    sqcaxrchux2ellog
  • Action:
    run_merge_csvs_spline
    Status:
    Failed
    Job identifier:
    i5qeldbfmsuln7td
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    run_cox_spline_bowel
    Status:
    Succeeded
    Job identifier:
    fhj5auftnkzt6xmj
  • Action:
    run_cox_spline_standinflix
    Status:
    Succeeded
    Job identifier:
    fkpewsa4j33vblwv
  • Action:
    run_cox_spline_standtnf
    Status:
    Succeeded
    Job identifier:
    d5n7zeq73gxtfe4w
  • Action:
    run_cox_spline_joint
    Status:
    Succeeded
    Job identifier:
    av3i6qvpatnfnrje
  • Action:
    run_cox_spline_standtnf3m
    Status:
    Failed
    Job identifier:
    6y3s5exlkgut7n7p
    Error:
    No outputs found matching patterns: - output/data/cox_spline_summary_haemonc_standtnf3m.dta
  • Action:
    run_forest_plots
    Status:
    Succeeded
    Job identifier:
    tmpra4lrgcve5s6k
  • Action:
    run_cox_spline_standil6
    Status:
    Succeeded
    Job identifier:
    ev6ve2ppj4iiq44i
  • Action:
    run_extract_n_subjects
    Status:
    Succeeded
    Job identifier:
    bfhle35ukwlhluyt
  • Action:
    run_cox_spline_skin
    Status:
    Succeeded
    Job identifier:
    6h4pn2kpm2n5gtqb
  • Action:
    run_baseline_tables
    Status:
    Succeeded
    Job identifier:
    vpdy3vnfteja4g4j
  • Action:
    run_spline_export_csv
    Status:
    Failed
    Job identifier:
    efcsxesledi2ybrl
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    run_cox_spline_standjaki
    Status:
    Failed
    Job identifier:
    7xwcisckesw5zefw
    Error:
    Internal error when starting job

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 234:45:37

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
immunosuppressant-meds-research
Requested by
Nick Kennedy
Branch
master
Force run dependencies
No
Git commit hash
93d1546
Requested actions
  • run_baseline_tables
  • run_cox_spline_imid
  • run_cox_spline_joint
  • run_cox_spline_skin
  • run_cox_spline_bowel
  • run_cox_spline_imiddrugcategory
  • run_cox_spline_standtnf
  • run_cox_spline_standtnf3m
  • run_cox_spline_tnfmono
  • run_cox_spline_standil6
  • run_cox_spline_standil17
  • run_cox_spline_standil23
  • run_cox_spline_standjaki
  • run_cox_spline_standritux
  • run_cox_spline_standinflix
  • run_spline_export_csv
  • run_forest_plots
  • run_merge_csvs_spline
  • run_extract_n_subjects

Code comparison

Compare the code used in this job request