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Job request: 23768

Organisation:
Bennett Institute
Workspace:
wp-work-package-1
ID:
sf4jd37zsrsbj2eq
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Arina Tamborska requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 1000

actions:
  generate_measures:
    run: ehrql:v1 generate-measures --output output/patient_measures/winter_pressure_measures.csv.gz analysis/measures_definition.py
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/winter_pressure_measures.csv.gz
  generate_app_measures:
    run: ehrql:v1 generate-measures --output output/appointments/app_measures.csv analysis/appointments/app_measures.py
    outputs:
      moderately_sensitive:
        dataset: output/appointments/app_measures.csv
  generate_app_viz:
    run: r:latest analysis/appointments/app_viz.r
    needs: [generate_app_measures]
    outputs:
      moderately_sensitive:
        app_figures: output/appointments/*.png
  generate_app_summary:
    run: python:latest analysis/appointments/app_summary.py
    needs: [generate_app_measures]
    outputs:
      moderately_sensitive:
        app_table: output/appointments/app_summary.csv
  generate_pre_processing:
    run: python:latest analysis/pre_processing.py 
        --output output/practice_measures/practice_measures.csv.gz
        --output output/patient_measures/processed_measures.csv.gz
        --output output/patient_measures/frequency_table.csv
    needs: [generate_measures]
    outputs:
      highly_sensitive:
        practice_measure: output/practice_measures/practice_measures.csv.gz
        patient_measure: output/patient_measures/processed_measures.csv.gz
      moderately_sensitive:
        frequency_table: output/patient_measures/frequency_table.csv
  generate_measures_viz:
    run: r:latest analysis/viz_measures.r
    needs: [generate_pre_processing]
    outputs:
      moderately_sensitive:
        app_figures: output/*/*.png
        total_measures: output/total_measures/*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 11:46:30

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Workspace
wp-work-package-1
Requested by
Arina Tamborska
Branch
main
Force run dependencies
No
Git commit hash
26a3cff
Requested actions
  • generate_measures
  • generate_app_measures
  • generate_app_viz
  • generate_app_summary
  • generate_pre_processing
  • generate_measures_viz

Code comparison

Compare the code used in this Job Request