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Job request: 24197

Organisation:
Bennett Institute
Workspace:
wp-work-package-1
ID:
7thkkbmvb2lbfz7b
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Jaidip Gill requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_patient_measures_2016-08-10:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2016-08-10.csv.gz
      --
      --patient_measures
      --start_intv 2016-08-10
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2016-08-10.csv.gz

  generate_patient_measures_2017-08-09:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2017-08-09.csv.gz
      --
      --patient_measures
      --start_intv 2017-08-09
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2017-08-09.csv.gz

  generate_patient_measures_2018-08-08:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2018-08-08.csv.gz
      --
      --patient_measures
      --start_intv 2018-08-08
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2018-08-08.csv.gz

  generate_patient_measures_2019-08-07:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2019-08-07.csv.gz
      --
      --patient_measures
      --start_intv 2019-08-07
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2019-08-07.csv.gz

  generate_patient_measures_2020-08-05:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2020-08-05.csv.gz
      --
      --patient_measures
      --start_intv 2020-08-05
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2020-08-05.csv.gz

  generate_patient_measures_2021-08-04:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2021-08-04.csv.gz
      --
      --patient_measures
      --start_intv 2021-08-04
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2021-08-04.csv.gz

  generate_patient_measures_2022-08-03:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2022-08-03.csv.gz
      --
      --patient_measures
      --start_intv 2022-08-03
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2022-08-03.csv.gz

  generate_patient_measures_2023-08-02:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2023-08-02.csv.gz
      --
      --patient_measures
      --start_intv 2023-08-02
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2023-08-02.csv.gz

  generate_practice_measures_2016-08-10:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2016-08-10.csv.gz
      --
      --practice_measures
      --start_intv 2016-08-10
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2016-08-10.csv.gz

  generate_practice_measures_2017-08-09:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2017-08-09.csv.gz
      --
      --practice_measures
      --start_intv 2017-08-09
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2017-08-09.csv.gz

  generate_practice_measures_2018-08-08:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2018-08-08.csv.gz
      --
      --practice_measures
      --start_intv 2018-08-08
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2018-08-08.csv.gz

  generate_practice_measures_2019-08-07:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2019-08-07.csv.gz
      --
      --practice_measures
      --start_intv 2019-08-07
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2019-08-07.csv.gz

  generate_practice_measures_2020-08-05:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2020-08-05.csv.gz
      --
      --practice_measures
      --start_intv 2020-08-05
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2020-08-05.csv.gz

  generate_practice_measures_2021-08-04:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2021-08-04.csv.gz
      --
      --practice_measures
      --start_intv 2021-08-04
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2021-08-04.csv.gz

  generate_practice_measures_2022-08-03:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2022-08-03.csv.gz
      --
      --practice_measures
      --start_intv 2022-08-03
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2022-08-03.csv.gz

  generate_practice_measures_2023-08-02:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2023-08-02.csv.gz
      --
      --practice_measures
      --start_intv 2023-08-02
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2023-08-02.csv.gz

  generate_app_measures_intv_1:
     run: ehrql:v1 generate-measures analysis/appointments/app_measures.py
      --output output/appointments/app_measures_1.csv 
      -- 
      --start_intv 2023-07-01
     outputs:
       moderately_sensitive:
         dataset: output/appointments/app_measures_1.csv
 
  generate_app_measures_intv_2:
     run: ehrql:v1 generate-measures analysis/appointments/app_measures.py
      --output output/appointments/app_measures_2.csv 
      -- 
      --start_intv 2023-12-01
     outputs:
       moderately_sensitive:
         dataset: output/appointments/app_measures_2.csv
 
  generate_app_measures_intv_3:
     run: ehrql:v1 generate-measures analysis/appointments/app_measures.py
      --output output/appointments/app_measures_3.csv 
      -- 
      --start_intv 2018-07-01
     outputs:
       moderately_sensitive:
         dataset: output/appointments/app_measures_3.csv
 
  generate_app_measures_intv_4:
     run: ehrql:v1 generate-measures analysis/appointments/app_measures.py
      --output output/appointments/app_measures_4.csv 
      -- 
      --start_intv 2018-12-01
     outputs:
       moderately_sensitive:
         dataset: output/appointments/app_measures_4.csv
 
  generate_app_processing:
     run: r:latest analysis/appointments/app_processing.r
     needs: [generate_app_measures_intv_1, generate_app_measures_intv_2, generate_app_measures_intv_3, generate_app_measures_intv_4]
     outputs:
       moderately_sensitive:
         table_rounded: output/appointments/app_measures_rounded_*.csv
         table_pivot: output/appointments/app_pivot_table_*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 05:51:33

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Workspace
wp-work-package-1
Requested by
Jaidip Gill
Branch
main
Force run dependencies
No
Git commit hash
a0fb9b1
Requested actions
  • generate_patient_measures_2016-08-10
  • generate_practice_measures_2016-08-10

Code comparison

Compare the code used in this Job Request