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Job request: 24200

Organisation:
Bennett Institute
Workspace:
wp-work-package-1
ID:
2hspw42u3t6zc7pv
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Arina Tamborska requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_patient_measures_2016-08-10:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2016-08-10.csv.gz
      --
      --patient_measures
      --start_intv 2016-08-10
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2016-08-10.csv.gz

  generate_patient_measures_2017-08-09:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2017-08-09.csv.gz
      --
      --patient_measures
      --start_intv 2017-08-09
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2017-08-09.csv.gz

  generate_patient_measures_2018-08-08:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2018-08-08.csv.gz
      --
      --patient_measures
      --start_intv 2018-08-08
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2018-08-08.csv.gz

  generate_patient_measures_2019-08-07:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2019-08-07.csv.gz
      --
      --patient_measures
      --start_intv 2019-08-07
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2019-08-07.csv.gz

  generate_patient_measures_2020-08-05:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2020-08-05.csv.gz
      --
      --patient_measures
      --start_intv 2020-08-05
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2020-08-05.csv.gz

  generate_patient_measures_2021-08-04:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2021-08-04.csv.gz
      --
      --patient_measures
      --start_intv 2021-08-04
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2021-08-04.csv.gz

  generate_patient_measures_2022-08-03:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2022-08-03.csv.gz
      --
      --patient_measures
      --start_intv 2022-08-03
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2022-08-03.csv.gz

  generate_patient_measures_2023-08-02:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/patient_measures/patient_measures_2023-08-02.csv.gz
      --
      --patient_measures
      --start_intv 2023-08-02
    outputs:
      highly_sensitive:
        dataset: output/patient_measures/patient_measures_2023-08-02.csv.gz

  generate_practice_measures_2016-08-10:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2016-08-10.csv.gz
      --
      --practice_measures
      --start_intv 2016-08-10
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2016-08-10.csv.gz

  generate_practice_measures_2017-08-09:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2017-08-09.csv.gz
      --
      --practice_measures
      --start_intv 2017-08-09
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2017-08-09.csv.gz

  generate_practice_measures_2018-08-08:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2018-08-08.csv.gz
      --
      --practice_measures
      --start_intv 2018-08-08
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2018-08-08.csv.gz

  generate_practice_measures_2019-08-07:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2019-08-07.csv.gz
      --
      --practice_measures
      --start_intv 2019-08-07
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2019-08-07.csv.gz

  generate_practice_measures_2020-08-05:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2020-08-05.csv.gz
      --
      --practice_measures
      --start_intv 2020-08-05
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2020-08-05.csv.gz

  generate_practice_measures_2021-08-04:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2021-08-04.csv.gz
      --
      --practice_measures
      --start_intv 2021-08-04
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2021-08-04.csv.gz

  generate_practice_measures_2022-08-03:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2022-08-03.csv.gz
      --
      --practice_measures
      --start_intv 2022-08-03
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2022-08-03.csv.gz

  generate_practice_measures_2023-08-02:
    run: ehrql:v1 generate-measures analysis/wp_measures.py
      --output output/practice_measures/practice_measures_2023-08-02.csv.gz
      --
      --practice_measures
      --start_intv 2023-08-02
    outputs:
      highly_sensitive:
        dataset: output/practice_measures/practice_measures_2023-08-02.csv.gz

  generate_app_measures_intv_1:
     run: ehrql:v1 generate-measures analysis/appointments/app_measures.py
      --output output/appointments/app_measures_1.csv 
      -- 
      --start_intv 2023-07-01
     outputs:
       moderately_sensitive:
         dataset: output/appointments/app_measures_1.csv
 
  generate_app_measures_intv_2:
     run: ehrql:v1 generate-measures analysis/appointments/app_measures.py
      --output output/appointments/app_measures_2.csv 
      -- 
      --start_intv 2023-12-01
     outputs:
       moderately_sensitive:
         dataset: output/appointments/app_measures_2.csv
 
  generate_app_measures_intv_3:
     run: ehrql:v1 generate-measures analysis/appointments/app_measures.py
      --output output/appointments/app_measures_3.csv 
      -- 
      --start_intv 2018-07-01
     outputs:
       moderately_sensitive:
         dataset: output/appointments/app_measures_3.csv
 
  generate_app_measures_intv_4:
     run: ehrql:v1 generate-measures analysis/appointments/app_measures.py
      --output output/appointments/app_measures_4.csv 
      -- 
      --start_intv 2018-12-01
     outputs:
       moderately_sensitive:
         dataset: output/appointments/app_measures_4.csv
 
  generate_app_processing:
     run: r:latest analysis/appointments/app_processing.r
     needs: [generate_app_measures_intv_1, generate_app_measures_intv_2, generate_app_measures_intv_3, generate_app_measures_intv_4]
     outputs:
       moderately_sensitive:
         table_rounded: output/appointments/app_measures_rounded_*.csv
         table_pivot: output/appointments/app_pivot_table_*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:51:14

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
wp-work-package-1
Requested by
Arina Tamborska
Branch
main
Force run dependencies
No
Git commit hash
6e76a04
Requested actions
  • generate_app_processing

Code comparison

Compare the code used in this job request