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Job request: 1733

Organisation:
Royal Devon & Exeter NHS Foundation Trust and University of Exeter
Workspace:
sro-gastro-cut-down
ID:
zkbc2knjn42efoen
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Nick Kennedy requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population
    Status:
    Status: Failed
    Job identifier:
    h23fl26pvzi7dcvn
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    run_model
    Status:
    Status: Failed
    Job identifier:
    fyeezkir4o4y2k4n
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  run_model:
    run: r:latest analysis/model.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        count_by_stp: output/qfit_by_stp.csv
        qfit_summary: output/summary_qfit_values.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:02:57

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
sro-gastro-cut-down
Requested by
Nick Kennedy
Branch
main
Force run dependencies
No
Git commit hash
34ed783
Requested actions
  • generate_study_population
  • run_model
  • run_all

Code comparison

Compare the code used in this job request

  • No previous job request available for comparison