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Job request: 7494

Organisation:
University of Liverpool
Workspace:
avoidable-hospitalisations-trends
ID:
z7ea2oupdvq6vgst
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Mark A Green requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population
    Status:
    Status: Failed
    Job identifier:
    diox2cbeji2k4j72
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    process_data
    Status:
    Status: Failed
    Job identifier:
    n3lrmjew2napxdgz
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    generate_measures
    Status:
    Status: Failed
    Job identifier:
    37bwuqdhct4eto44
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:
    
  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition --index-date-range "2019-01-01 to 2022-04-30 by month" --skip-existing --output-dir=output/measures --output-format=csv.gz
    outputs:
      highly_sensitive:
        cohort: output/measures/input_*.csv.gz

  generate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition --skip-existing --output-dir=output/measures
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        measure_csv: output/measures/measure_*.csv

  process_data:
    run: r:latest analysis/create_age_standardised_outputs.R
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        figure: output/measures/standardised_*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 48:58:45

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
avoidable-hospitalisations-trends
Requested by
Mark A Green
Branch
main
Force run dependencies
Yes
Git commit hash
e43eeae
Requested actions
  • generate_study_population
  • generate_measures
  • process_data
  • run_all

Code comparison

Compare the code used in this job request