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Job request: 23634

Organisation:
University of Bristol
Workspace:
metformin-covid-main
ID:
d656hd5tj3oluwmk
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Alain Amstutz requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    study_dates
    Status:
    Status: Succeeded
    Job identifier:
    midlggh2tzkeyywj
  • Action:
    generate_dataset
    Status:
    Status: Succeeded
    Job identifier:
    2nbeth22o2rabtdy
  • Action:
    data_process
    Status:
    Status: Succeeded
    Job identifier:
    3yul34m2p5l5bzli
  • Action:
    feasibility
    Status:
    Status: Succeeded
    Job identifier:
    ys3ian5k6n5llkmc

Pipeline

Show project.yaml 
version: '3.0'

# Ignore this`expectation` block. It is required but not used, and will be removed in future versions.
expectations:
  population_size: 1000

actions:
  study_dates:
    run: r:latest analysis/metadates.R
    outputs:
      highly_sensitive:
        study_dates_json: output/study_dates.json

  generate_dataset:
    run: ehrql:v1 generate-dataset analysis/dataset_definition_feasibility.py --output output/dataset.arrow
    needs: 
    - study_dates
    outputs:
      highly_sensitive:
        dataset: output/dataset.arrow
  
  data_process:
    run: r:latest analysis/data_process.R
    needs:
    - generate_dataset
    outputs:
      highly_sensitive:
        rds: output/data/*.rds

  feasibility:
    run: r:latest analysis/feasibility.R
    needs:
    - data_process
    outputs:
      moderately_sensitive:
        csv: output/data_properties/*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:59:19

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
metformin-covid-main
Requested by
Alain Amstutz
Branch
main
Force run dependencies
Yes
Git commit hash
565ea05
Requested actions
  • study_dates
  • generate_dataset
  • data_process
  • feasibility
  • run_all

Code comparison

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