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Job request: 23670

Organisation:
University of Bristol
Workspace:
metformin-covid-main
ID:
3pw7ibnqvjgqmt2e
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Alain Amstutz requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    study_dates
    Status:
    Status: Succeeded
    Job identifier:
    ee7k43xcjvlibthj
  • Action:
    generate_dataset
    Status:
    Status: Succeeded
    Job identifier:
    dqoukwtmmkojb7mi
  • Action:
    data_process
    Status:
    Status: Succeeded
    Job identifier:
    cfsqyrvjlxuxyu4p
  • Action:
    feasibility
    Status:
    Status: Succeeded
    Job identifier:
    bp5utu56lovpkmvp

Pipeline

Show project.yaml 
version: '3.0'

# Ignore this`expectation` block. It is required but not used, and will be removed in future versions.
expectations:
  population_size: 1000

actions:
  study_dates:
    run: r:latest analysis/metadates.R
    outputs:
      highly_sensitive:
        study_dates_json: output/study_dates.json

  generate_dataset:
    run: ehrql:v1 generate-dataset analysis/dataset_definition_feasibility.py --output output/dataset.arrow
    needs: 
    - study_dates
    outputs:
      highly_sensitive:
        dataset: output/dataset.arrow
  
  data_process:
    run: r:latest analysis/data_process.R
    needs:
    - generate_dataset
    outputs:
      highly_sensitive:
        rds: output/data/*.rds

  feasibility:
    run: r:latest analysis/feasibility.R
    needs:
    - data_process
    outputs:
      moderately_sensitive:
        csv: output/data_properties/*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:31:30

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
metformin-covid-main
Requested by
Alain Amstutz
Branch
main
Force run dependencies
Yes
Git commit hash
b44419a
Requested actions
  • study_dates
  • generate_dataset
  • data_process
  • feasibility
  • run_all

Code comparison

Compare the code used in this job request