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Job request: 25397

Organisation:
University of Bristol
Workspace:
post-covid-cvd-methods-v1
ID:
v4prkjdaqthfpug7
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Emma Tarmey requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    study_dates
    Status:
    Succeeded
    Job identifier:
    3j4tp53oyyqbfdjr
  • Action:
    generate_dates
    Status:
    Succeeded
    Job identifier:
    kni7gjh7ggqxz33a
  • Action:
    generate_input_prevax
    Status:
    Succeeded
    Job identifier:
    jfekmyfxdmhcz427
  • Action:
    generate_input_prevax_clean
    Status:
    Succeeded
    Job identifier:
    5bat52to6v3g3bwp
  • Action:
    make_model_input-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    uuzzvaturm6pbyxk
  • Action:
    make_model_input-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    kp3vjrcbtptfivk3
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    qhvjr4cw6khhm4qi
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    pphkey6too772ttw
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    dvxtd3n3nu5sznrx
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    e3cma74kqgkdmjzr
  • Action:
    table1-cohort_prevax
    Status:
    Succeeded
    Job identifier:
    n2yzmy6y4wk7uilt
  • Action:
    cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    ulk6saxtqu2fgqfm
  • Action:
    cox_ipw-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    ykda774sdajastuz
  • Action:
    lasso_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    45wfgboqvayh4skh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    rkhbywr6nhu2eccr
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    cyosxcdjy62idl72
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    nhuhn6suub6abrub
  • Action:
    venn-cohort_prevax
    Status:
    Succeeded
    Job identifier:
    25uumo5q3bbjb2xt
  • Action:
    table2-cohort_prevax-sub_covidhospital
    Status:
    Succeeded
    Job identifier:
    figiqlgcjijtwsy5
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    howhojukez3sdyku
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    vw7tze5gtvioetrx
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    e35wf77567fn7abv
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    s2q6ijvp5mt5vcr3
  • Action:
    make-table2-sub_covidhospital-output
    Status:
    Succeeded
    Job identifier:
    hky6v5sztr65a2tz
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    azqceyds5udqrxvp
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    l7fjdizvdhdzhlj6
  • Action:
    make-venn-output
    Status:
    Succeeded
    Job identifier:
    7nx5hoxuwopxmlzs
  • Action:
    make_model_output-sub_covidhospital
    Status:
    Succeeded
    Job identifier:
    dtnymlngwvlxg3dq
  • Action:
    make_model_output-main
    Status:
    Succeeded
    Job identifier:
    vdbr6log35qd54we
  • Action:
    make-table1-output
    Status:
    Succeeded
    Job identifier:
    zvashhf7rgybsoh5
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    lz6nr3ziipvarx64
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    evkoiqajsc6zpchs
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    ocfqyrqtvqzw2qds
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    mil35lcwbcpzye4u
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    gsmgj45b4gtjyhms
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    sjxckycjarpx4yzv
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    fyjet2meeay5lu2a
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    stsezdtjb7jyd5td
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    2ihh6gzfthgziobw
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    auk2y2u25kfbzpta
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    7yyeze4ijg3outdp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    3grzhkb5u7v6zdja
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    ofwd5isrdpy47jux
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    cza2db6kbwn72huj
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    jtcdznlieyqrltct
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    43e7lh2yafekqvg2
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    6vqang2mw6g3d4ag
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    xsck35s4slgclsvf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    s632rnqjylpbc65m
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    ifraqye6gjx2r2zf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    7r7fkhktwahhggyj
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    a2zpmpnejfjerhve
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    gsszzbyurk4tmb4k
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    2psauq2iekaclten
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    lwse7pl4jlm3cnkn
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    z7ovf2sx64aquzgx
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    yjk6tvg7balkhjz2
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    rm7ncxlmrueys6wr
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    c4f5g3veu6zipen5
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    exesh5gs5m3dxl72
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    in2ysiixb5g46vi7
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    4zp6h6gdwnxgpxqc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    jinwha2r6xcr3oz5
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    x2xzsb2blpsag4rh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    55urohibmo6cqhng
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    ko2omtqpqodn2ov5
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    kleldkfu3gun5gql
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    wbwpupy6zvwd22u5
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    osjg7wtui44o4svh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    ypzketjlxtanmvhx
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    iyjpm7lsngabxgbw
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    jyui72if23f5hy5d
    Error:
    cancelled_by_user: Cancelled by user

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 2972:10:57

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-cvd-methods-v1
Requested by
Emma Tarmey
Branch
main
Force run dependencies
Yes
Git commit hash
b73e1f4
Requested actions
  • run_all

Code comparison

Compare the code used in this job request