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Job request: 25497

Organisation:
University of Bristol
Workspace:
post-covid-cvd-methods-v1
ID:
7p2ce7p7tqdj6swp
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Emma Tarmey requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    study_dates
    Status:
    Succeeded
    Job identifier:
    hgrz43cf2xfkj22v
  • Action:
    generate_dates
    Status:
    Succeeded
    Job identifier:
    d2hgc6g47y2bpmrj
  • Action:
    generate_input_prevax
    Status:
    Succeeded
    Job identifier:
    fpnoirej5ciclzoo
  • Action:
    generate_input_prevax_clean
    Status:
    Succeeded
    Job identifier:
    tu6jc3t3zmiuktrb
  • Action:
    make_model_input-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    w7defkue4uz5pq4l
  • Action:
    make_model_input-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    l4euwtyb3igcqoaa
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    ki5nbxlq2rssua2e
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    ymp44ov7x735jucm
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    s4o4um2ekuqwx3op
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    zn64pvoevkjxgdkq
  • Action:
    table1-cohort_prevax
    Status:
    Succeeded
    Job identifier:
    wu3dz7fxikyoinhh
  • Action:
    generate_subsample_cohort_prevax
    Status:
    Succeeded
    Job identifier:
    od44c3okby2c6wbg
  • Action:
    make_model_input_subsample-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    engb3rx262yr2cnh
  • Action:
    make_model_input_subsample-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    s5zqn4erx2wjxooc
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    6el3djufvlu3kyst
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    utfgop27q6s2lfp6
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    xzjqr6aubwxgsjcp
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    wo3huep23m5trukm
  • Action:
    table1-cohort_prevax_subsample
    Status:
    Succeeded
    Job identifier:
    2km6wce6zv4dofzr
  • Action:
    lasso_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    7nulqhic33cw3i7e
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_ipw-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    w6bxtcnimuevuy3b
  • Action:
    cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    n47fleyxvyryfyai
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    2nk64tycwrr62akl
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    z7osi63dz5cjblsr
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    ygefvaz2sabthrog
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    btultd3tqdcghxtg
  • Action:
    table2-cohort_prevax-sub_covidhospital
    Status:
    Succeeded
    Job identifier:
    grhueim5m6iy4whv
  • Action:
    make-table2-sub_covidhospital-output
    Status:
    Succeeded
    Job identifier:
    ndcclj5g5bgqilas
  • Action:
    venn-cohort_prevax
    Status:
    Succeeded
    Job identifier:
    5u2ymvqq34poekxw
  • Action:
    make-venn-output
    Status:
    Succeeded
    Job identifier:
    yn5vpa4w762mub5r
  • Action:
    lasso_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    ispni75tsice3t2b
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    x7et33mw5ko752dw
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    jeq42tynfypvfpez
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    xevlommxz5q7ie6t
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    dgmy6jjtnxa34oqt
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    make_model_output-main
    Status:
    Succeeded
    Job identifier:
    nd7vidpglxgpcyka
  • Action:
    make_model_output-sub_covidhospital
    Status:
    Succeeded
    Job identifier:
    3i3i26c2vdrpz5po
  • Action:
    make-table1-output
    Status:
    Succeeded
    Job identifier:
    a5wy5bex2z2lzxul
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    b2ycwf5aigyvsebr
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    vmw7jhzvzcpbsqu6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    asrq6cbhyapemhw3
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_cox_model-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    lufv2udbyr537mna
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    e6562mqknkuhulgl
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    wdj7zwxchvkuinwo
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    p3skcvletpkzvgz2
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    thgzhq62zld6vqyc
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    l2f5c5di26a3gwzy
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    a2hzahfy4gvjrljl
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    kbrnxpemqvbqnh6y
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    ys7hdshe3pftdd5g
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    livc2rou7ewonunx
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    cswqc4vtpkpahpez
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    fgrnzcad77ld3zby
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    qanh73x5u72hbygk
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    j5n2giuemuqmztnj
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    darbc5mzdyhlxhxg
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    yybv6iq6qw3f6eht
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    mxmbqsmrgfv7qcry
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    cdfowv4zu55ueqfi
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    a2aouzhddflwgr6m
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    qcy5lp7xvessakl4
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    ehy4jmjpbypbbfsf
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    mt5rorbqqbwqy7a7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    2oz4rdh6okoqtja4
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    22ifmo234tt4ec2r
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    znjo2mjo7ynfzjgr
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    d2lozjfenjtusgfj
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    zybwunwpw7g53ulx
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    wiqoerjwrznryh6a
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    unconfoundedness_test-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    eh3viyyjgmnku3k6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    h7zwtrloz7p5tecc
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    unconfoundedness_test-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    f2hqurdpwkux5oj2
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_cox_model-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    mfnwlnkv3m7ksty5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    6mjw2lbnikrpaxhq
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    sy546hge7e37cyrm
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    nlpl6cum3zjidig6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    akargtgqg2cezktu
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    phxtpqzzwziubpty
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    wyrlbpddkktpgp44
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    l4hacz5auprl66am
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 118:15:10

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-cvd-methods-v1
Requested by
Emma Tarmey
Branch
main
Force run dependencies
Yes
Git commit hash
7bb24c6
Requested actions
  • run_all

Code comparison

Compare the code used in this job request