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Job request: 25584

Organisation:
University of Bristol
Workspace:
post-covid-cvd-methods-v1
ID:
tiuiv6ftzghdh35s
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Emma Tarmey requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    study_dates
    Status:
    Succeeded
    Job identifier:
    d4mqbvuszzcc4cqo
  • Action:
    generate_dates
    Status:
    Succeeded
    Job identifier:
    dh3g4exg33xr2wey
  • Action:
    generate_input_prevax
    Status:
    Succeeded
    Job identifier:
    ssdm74g7dfrvgsct
  • Action:
    generate_input_prevax_clean
    Status:
    Succeeded
    Job identifier:
    jmqitq37u4qkdaxu
  • Action:
    generate_subsample_cohort_prevax
    Status:
    Succeeded
    Job identifier:
    g3lzldebzskqypyr
  • Action:
    make_model_input-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    spdkgxe434clg7f7
  • Action:
    table1-cohort_prevax
    Status:
    Succeeded
    Job identifier:
    zwrqvijyulvc6dxj
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    27wd64svcuos6fyc
  • Action:
    make_model_input-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    6rnnthdk3nohxfbf
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    jlfresypvtj62otx
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    axyqgua54puzknoq
  • Action:
    make_model_input_subsample-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    uhfqijphejyz7j2d
  • Action:
    lasso_var_selection-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    pflrhsd5s2echttf
  • Action:
    make_model_input_subsample-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    v5hjrwkgehn5wo3x
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    7bu26kkqveilyii7
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    jeydcogitztd7tts
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    sq3vdt2kihsry4nf
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    wabir3afey42e4hk
  • Action:
    lasso_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    xp7lg3ttiu5pgm47
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    bo6jlzvkctic3iov
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    unoyucnrkqwpdhxs
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    gbqdtwewe6ul7kvw
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    vrqpihu2ttue733j
  • Action:
    make-table1-output
    Status:
    Succeeded
    Job identifier:
    tlzknjza32k3qa7d
  • Action:
    table1-cohort_prevax_subsample
    Status:
    Succeeded
    Job identifier:
    5qp32tiacn4qwi3c
  • Action:
    cox_ipw-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    45bnk65jrhwz6ql6
  • Action:
    cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    p6xxdwedtidhypah
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    3te3k6q34hxpuxo2
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    o4ofqdci2lemoijz
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    dkf35vkw3w74nh6k
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    rwnxmooomd4dfhyq
  • Action:
    make_model_output-main
    Status:
    Succeeded
    Job identifier:
    k4qvygntxppamcvh
  • Action:
    venn-cohort_prevax
    Status:
    Succeeded
    Job identifier:
    5n46zt7jj56u7vat
  • Action:
    make-venn-output
    Status:
    Succeeded
    Job identifier:
    rujtxzkf36fc6jwh
  • Action:
    table2-cohort_prevax-sub_covidhospital
    Status:
    Succeeded
    Job identifier:
    4fwvzax7eys2hwv4
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    h35e3l4fzcbejdgm
  • Action:
    make-table2-sub_covidhospital-output
    Status:
    Succeeded
    Job identifier:
    vasifw34ostqpwnm
  • Action:
    make_model_output-sub_covidhospital
    Status:
    Succeeded
    Job identifier:
    crvbpblnc5dej5sg
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    oglrcxm5i3lpjncs
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    rbmfww42hkmnicji
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    pf5txbypimb3gjbp
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    c6llxsav4ygrlslf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    zvluyrsmior2kqpb
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    ti2bfanyasyupd56
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    poz4iyfxm7wa7wgn
  • Action:
    lasso_X_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    jvlfgk6fuee5qjhe
  • Action:
    lasso_union_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    j6o5kbhdp4becj5k
  • Action:
    make_lasso_cox_model-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    cfg7nj4hchq4dog7
  • Action:
    unconfoundedness_test-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    2cbmxorwaqjsrp43
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    tlwg3javxa47ic3y
  • Action:
    lasso_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    xrukldffm7vl42qo
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    txqglpsuf7kktjzj
  • Action:
    lasso_X_var_selection-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    27fzawj6smenmuy6
  • Action:
    lasso_union_var_selection-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    3rldwiqpqtameejn
  • Action:
    make_lasso_cox_model-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    4kzsdg7fh3kw4uao
  • Action:
    unconfoundedness_test-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    xfojit3x3h4bq4r3
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    i376ag537ghdr5nf
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    wmd7qy3pqbdgk5hv
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-ami
    Status:
    Succeeded
    Job identifier:
    jvbwspn3cgbm6bbp
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    z5n6x3vvskddi7qf
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    vbko4udt3nz6fxqb
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    glernohyy2akt5aq
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    jnekfuqcreapydig
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    2snecg3bzwbptqbv
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    am72yaj5uadjg3xl
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Succeeded
    Job identifier:
    6jvhn4q6whv3ge3n
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    um2il33rnfa6gxnv
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    dyztknefq6u36cod
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    ac4lfydcu7mrpdiz
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    crryfuqq4zug356x
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    bxkja2dvuypnzfbc
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    d4uyqqaihqjy2j2g
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    tkqbwz5kdqkswwrl
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    35z6kmhxxhcaepao
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    u4gytroqcdumt6fu
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    eht3fhuzswmgdqka
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    53mypacbeuhhfjfh
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    3jv3athxjhxqngx2
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Succeeded
    Job identifier:
    fc2x3xvbqx7h52ym
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Succeeded
    Job identifier:
    zq3aexrgkrfyny6o

Pipeline

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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 3912:24:07

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-cvd-methods-v1
Requested by
Emma Tarmey
Branch
main
Force run dependencies
Yes
Git commit hash
57d7173
Requested actions
  • generate_subsample_cohort_prevax
  • make_model_input_subsample-cohort_prevax-main-ami
  • make_model_input_subsample-cohort_prevax-main-stroke_sahhs
  • make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-ami
  • make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
  • make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-ami
  • make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
  • table1-cohort_prevax
  • make-table1-output
  • table1-cohort_prevax_subsample
  • lasso_var_selection-cohort_prevax-main-ami
  • lasso_var_selection-cohort_prevax-main-stroke_sahhs
  • lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
  • lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
  • lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
  • lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
  • lasso_X_var_selection-cohort_prevax-main-ami
  • lasso_X_var_selection-cohort_prevax-main-stroke_sahhs
  • lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
  • lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
  • lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
  • lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
  • lasso_union_var_selection-cohort_prevax-main-ami
  • lasso_union_var_selection-cohort_prevax-main-stroke_sahhs
  • lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
  • lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
  • lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
  • lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
  • make_lasso_cox_model-cohort_prevax-main-ami
  • make_lasso_cox_model-cohort_prevax-main-stroke_sahhs
  • make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-ami
  • make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
  • make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-ami
  • make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
  • lasso_cox_ipw-cohort_prevax-main-ami
  • lasso_cox_ipw-cohort_prevax-main-stroke_sahhs
  • lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
  • lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
  • lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
  • lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
  • lasso_X_cox_ipw-cohort_prevax-main-ami
  • lasso_X_cox_ipw-cohort_prevax-main-stroke_sahhs
  • lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
  • lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
  • lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
  • lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
  • lasso_union_cox_ipw-cohort_prevax-main-ami
  • lasso_union_cox_ipw-cohort_prevax-main-stroke_sahhs
  • lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
  • lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
  • lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
  • lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
  • unconfoundedness_test-cohort_prevax-main-ami
  • unconfoundedness_test-cohort_prevax-main-stroke_sahhs
  • unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-ami
  • unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
  • unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-ami
  • unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
  • table2-cohort_prevax-sub_covidhospital
  • make-table2-sub_covidhospital-output
  • venn-cohort_prevax
  • make-venn-output
  • make_model_output-main
  • make_model_output-sub_covidhospital

Code comparison

Compare the code used in this job request