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Job request: 25956

Organisation:
University of Bristol
Workspace:
post-covid-cvd-methods-v1
ID:
brendgt2ovzcz6dw
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Emma Tarmey requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    study_dates
    Status:
    Succeeded
    Job identifier:
    v63qnv436wjcys5i
  • Action:
    cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    u73h4vliahgkl6v5
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    w4qgmh6mdopqngxk
  • Action:
    generate_dates
    Status:
    Pending
    Job identifier:
    3adbejyjdywon643
  • Action:
    generate_input_prevax
    Status:
    Pending
    Job identifier:
    keorobog2ds2c22q
  • Action:
    generate_input_prevax_clean
    Status:
    Pending
    Job identifier:
    tgscca73cocb47tb
  • Action:
    generate_subsample_cohort_prevax
    Status:
    Pending
    Job identifier:
    o5nvuea5jnnyasim
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    h74bksbx3jyfkeqx
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    gsyz6h7dadtidi3e
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    sj73cw7lbrqgao3o
  • Action:
    lasso_X_var_selection-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    gub75gjmk6pmmlpt
  • Action:
    lasso_X_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    coetxmuromxxxai2
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    bj4ubvek53jg2irc
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    i7thv5ugmmk4dmlo
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    iwjcqx72saq5xhpu
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    pmdhd5tib2jvlaki
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    hmzfesnkk6hmualw
  • Action:
    lasso_union_var_selection-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    ysggaqnsgnuppiv7
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    iurjl73rlohbzjii
  • Action:
    make-table1-output
    Status:
    Pending
    Job identifier:
    5wekvjprgsjipcd3
  • Action:
    make_lasso_model_output-main
    Status:
    Pending
    Job identifier:
    ad2lgjejm3rlddko
  • Action:
    unconfoundedness_test-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    otoypeofisuvjf6r
  • Action:
    unconfoundedness_test-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    av2o3i2s5vii4gk3
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    afpfberxepp7sjq7
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    jxrsnkbe5biykogh
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    hseml2bg44ffqerz
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    xypx5ts4ojplw7hu
  • Action:
    venn-cohort_prevax
    Status:
    Pending
    Job identifier:
    iqtrhyf7yrndzyrm
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    lkqefc64n2bxwiub
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    cltcsb6fempwfnbj
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    wjowzub573cskqfa
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    5w2kkr7q3wt3uhj6
  • Action:
    lasso_union_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    5tsptbovayjokrgp
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    bozirnyndkgodrdx
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    rwjb3kzlcoykgz3z
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    qvsejc6oapsqsp4l
  • Action:
    make-table2-sub_covidhospital-output
    Status:
    Pending
    Job identifier:
    iwdjqmvujiietzh5
  • Action:
    make-venn-output
    Status:
    Pending
    Job identifier:
    srm6hktqymwercmb
  • Action:
    make_lasso_cox_model-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    mlcakfvte7r4i6nk
  • Action:
    make_lasso_cox_model-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    aipjwhglq35s5r4w
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    rwzs3dm3ak3a7cwq
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    4chvtjgpnuaefcfn
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    he6xgxe5tkpdcs7u
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    bt5usdy2tvirddwr
  • Action:
    make_lasso_model_output-sub_covidhospital
    Status:
    Pending
    Job identifier:
    nijboul4tpfvl4xr
  • Action:
    make_lasso_union_model_output-main
    Status:
    Pending
    Job identifier:
    ttlrmvmyd4gkoddw
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    mncgyk3qoncqg43c
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    yuvamndvmnq6woc4
  • Action:
    make_model_output-main
    Status:
    Pending
    Job identifier:
    qtaio4o52c57qsiw
  • Action:
    make_model_output-sub_covidhospital
    Status:
    Pending
    Job identifier:
    giapioc6chaaeg5t
  • Action:
    table1-cohort_prevax
    Status:
    Pending
    Job identifier:
    om32ccfm45kmoz4d
  • Action:
    table1-cohort_prevax_subsample
    Status:
    Pending
    Job identifier:
    wqlucigl5g6suxai
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    dlsbw3c75liy56f5
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    6t4ropeu7oxh6dsj
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    c55orosepzwuhbq6
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    bzyphialiwttzebh
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    a5vxp4xd32o4wqoa
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    hdsyiwshnw63as6o
  • Action:
    lasso_cox_ipw-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    ipg3y6rihzvezrxe
  • Action:
    lasso_var_selection-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    2j4fqvc25zbcji4a
  • Action:
    lasso_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    n7lqcqvtbjnno3wa
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    whydkvqp55pot6eu
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    xztizpc6x753ggwf
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    wdkyfxrwon3olmz5
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    4sfgtogpzl4g4gjk
  • Action:
    make_lasso_X_model_output-main
    Status:
    Pending
    Job identifier:
    pq3voij4527nuha5
  • Action:
    make_lasso_X_model_output-sub_covidhospital
    Status:
    Pending
    Job identifier:
    jsgmdal33cmwuw7d
  • Action:
    make_lasso_union_model_output-sub_covidhospital
    Status:
    Pending
    Job identifier:
    kvwa7kmzysnapogx
  • Action:
    make_model_input-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    sxbbwgxgx7armmnn
  • Action:
    make_model_input-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    lbsgf6ofcavjuokc
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    hikungh5cp3vykip
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    ldw77bjua3awpvpc
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    ek2ghb4bfcwhq55r
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    bmuidsttrexr4q4n
  • Action:
    make_model_input_subsample-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    ubgqonjqmnpim65a
  • Action:
    make_model_input_subsample-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    aobxp6qg6bqycj5h
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    onobmcbmzw7q2ppg
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    zr2mxqma6rpemfwc
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    kcvd4xvb5inueagt
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    c3dcomqqrasyzd3v
  • Action:
    lasso_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    cupd6n2bba4mxctl
  • Action:
    table2-cohort_prevax-sub_covidhospital
    Status:
    Pending
    Job identifier:
    uec4m27deolvh7ga
  • Action:
    variable_selection_output-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    47nudji6zwloyhm7
  • Action:
    variable_selection_output-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    rg32x3qhhmod2gnj
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    jrz5vuiyiuazthmq
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    4543p5v3bsm3jlbe
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Pending
    Job identifier:
    i3wit6r32qucy3oz
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Pending
    Job identifier:
    d3bnboxjhmsp6y4c
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Pending
    Job identifier:
    j6h2f2xhgo2727eh
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    juaelnwrgn25pumr
  • Action:
    cox_ipw-cohort_prevax-main-ami
    Status:
    Pending
    Job identifier:
    m35soslfoi7p6uqn
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Pending
    Job identifier:
    txnwauwakeylo5ym

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Runtime: 00:00:19

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Running
Backend
TPP
Workspace
post-covid-cvd-methods-v1
Requested by
Emma Tarmey
Branch
main
Force run dependencies
Yes
Git commit hash
bc809e8
Requested actions
  • run_all

Code comparison

Compare the code used in this job request