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Job request: 26308

Organisation:
University of Bristol
Workspace:
post-covid-cvd-methods-v1
ID:
v5u3qjkvltwqflwf
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Emma Tarmey requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    study_dates
    Status:
    Succeeded
    Job identifier:
    4ojzxr6tetcepmke
  • Action:
    generate_dates
    Status:
    Succeeded
    Job identifier:
    4b5dbnv7ac2xlta2
  • Action:
    generate_input_prevax
    Status:
    Succeeded
    Job identifier:
    j7fjtfoiixoiswse
  • Action:
    generate_input_prevax_clean
    Status:
    Failed
    Job identifier:
    vlbqia3zakasltrn
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    oygss4zikar2lzmn
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    cbif6jamoj3jjxiy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    ebrhd2owuq5lz5dc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    table2-cohort_prevax-sub_covidhospital
    Status:
    Failed
    Job identifier:
    dct3uun2ekaveizw
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    loqsfsnhc2bycnd3
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    ph6cfy4lfipa5oxn
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    fgnfaap4kmghos3z
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    v4awg3qaa5mpc3ef
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    jwg75urqpei4aozv
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    venn-cohort_prevax
    Status:
    Failed
    Job identifier:
    ry342bqk6gh6htms
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    sm2dzvcgxvmbc3es
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    rfkta6ujxhmpc2it
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    czql3whohuyjjcyl
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    okftlnbisdgkeqhu
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    vglj35qghboqtqzg
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make-table1-output
    Status:
    Failed
    Job identifier:
    r5p77pzohzushii5
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_output-main
    Status:
    Failed
    Job identifier:
    xjhcymlxt5g6a4ac
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    variable_selection_output-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    lltpowskf3z7zkq6
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    ynhkqbfzs25xamkl
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    vvfly3tosz5sbrvk
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    th7aealdevja7te4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    kbx7sl3lgmrc3kxz
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    post_hoc_vars_cohort_prevax
    Status:
    Failed
    Job identifier:
    ma63lpvqpz6jxqjy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_subsample_cohort_prevax
    Status:
    Failed
    Job identifier:
    pdoyqmlgntgzekxf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    g2dww6jq5kh3zntv
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    7n56mptrnxzatzxh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_output-sub_covidhospital
    Status:
    Failed
    Job identifier:
    by36uaiiyiqg5qaa
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    table1-cohort_prevax
    Status:
    Failed
    Job identifier:
    tclg6dhc57ujzbfd
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    table1-cohort_prevax_subsample
    Status:
    Failed
    Job identifier:
    sfsdbivohi3qcuyv
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    s3pj3ulqszakfx5x
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    variable_selection_output-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    k6kx6pfjsjjwiina
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    cbwuxfh54g4gco6r
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    r32vqtcwzisygs2i
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    vq4baoa6gkjy534o
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_X_model_output-sub_covidhospital
    Status:
    Failed
    Job identifier:
    hxjg5wxzmlp5qqgz
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    2p6fmwdb6pjp7car
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    dpjpik4nupz5mfqr
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    jz6syjei44ll6i53
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    xqa4r6cnvibrvukc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    xumn7otl43foidre
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_model_output-main
    Status:
    Failed
    Job identifier:
    bfcmcqqimaucpstk
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    sqjyq3afxlnporeq
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    vetwipoeitgm5h7m
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    krvpx26j4qjrthhu
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    vden7amp4zixxv3k
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    ob4zksx5erzkmwmi
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    awumybv3wprekiuc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    w73xuih4e43piq3r
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    vkmcf7z3h6es2gvm
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make-venn-output
    Status:
    Failed
    Job identifier:
    jl66t7vr3bgz4pdk
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_X_model_output-main
    Status:
    Failed
    Job identifier:
    uymbq7rr35xn74ii
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    girsn4dqwfmhcqzn
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_model_output-sub_covidhospital
    Status:
    Failed
    Job identifier:
    ut5mnnz75y6cfyna
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_union_model_output-main
    Status:
    Failed
    Job identifier:
    nk4oi3qlx5mfzuxx
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    ny5f7f2kvezw3pdd
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    7gv2ni6ruqyywtkm
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    vuw5cq7s7axyam5a
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    e4xf4k5gnzb4rm2t
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    3526b2eaqk3x33kv
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    to2jjf5fn77tvzcb
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    d45yaxs3gcctnbcu
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    ihpfq3ruxgmc4i3w
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    kr4f75uzz4nmkswz
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    arbcifildbaapvcc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    f45eum465m7heafe
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    3wlvt5thvh3x66fv
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    qgd5c2ejjq7ki6zh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    bsa7dsekriqytecy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make-table2-sub_covidhospital-output
    Status:
    Failed
    Job identifier:
    64dnbsi2nihd2b23
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    iwmyngxifbs7zb53
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    7re7ba63jdrdygfm
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    pp4mx2kimsh5vxrg
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    km6lbppneurrgwqp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    fazd2ctqfxp7olf4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    u4nm54eavvrqc74w
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    tl7y6fnfatagrf3t
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    bdaiicpyv4dptjsl
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    3nmazekvksf54xuh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    vkjnapzxdmg5a3q3
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    4i2xcvw7stxzgmg5
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    yfx5als7vobv2go2
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    z56ya4qpxglderxf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    eyglyun4zxn3e6kt
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    g7mj55le3475nqnb
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    qnbql3nsd7m5cuvs
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    iib3ladft7nvnqfu
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    mq66yitmh5n3febi
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    26f3lnbawj7quvsh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_union_model_output-sub_covidhospital
    Status:
    Failed
    Job identifier:
    yddmwet74yl3gke2
    Error:
    cancelled_by_user: Cancelled by user

Pipeline

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Job statistics

Status Count Percentage
Pending 0 0%
Running 0 0%
Succeeded 3 3.2%
Failed 90 96.8%

93 / 93 (100%) complete

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 23:58:07

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-cvd-methods-v1
Requested by
Emma Tarmey
Branch
main
Force run dependencies
Yes
Git commit hash
8c71fbb
Requested actions
  • run_all

Code comparison

Compare the code used in this job request