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Job request: 26568

Organisation:
University of Bristol
Workspace:
post-covid-cvd-missingness-methods-v1
ID:
gjjjjp3yy2snsamn
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Emma Tarmey requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    study_dates
    Status:
    Succeeded
    Job identifier:
    kobz7q4xumn72e7v
  • Action:
    generate_dates
    Status:
    Succeeded
    Job identifier:
    vqa46w524r3zxiqw
  • Action:
    generate_input_prevax
    Status:
    Succeeded
    Job identifier:
    4duica4fu5lpffru
  • Action:
    generate_input_prevax_clean
    Status:
    Succeeded
    Job identifier:
    brmaiviwey63bkrl
  • Action:
    table_missingness_cohort_prevax
    Status:
    Succeeded
    Job identifier:
    zmkbovgngnbwoksh
  • Action:
    apply_across_MI_cohort_prevax
    Status:
    Running
    Job identifier:
    ym7gzpdfmlh5y7zp
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    oivedh4z6jvyue44
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    otsuquficslun4qr
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    qklxupwzovlbytpx
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    s4d42uc4u56bmvg5
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    fuoyatm2jr5llwah
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    jgwd3ij4i73qz377
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    2wctptpmoy7i2umx
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make-table2-sub_covidhospital-output
    Status:
    Failed
    Job identifier:
    jprl6vw5o2v4iyki
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    ey56gl74zenm2qr4
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    wi2ljuspuipcwass
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    bsuuxfzngwtzqfi4
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    fm3c4mtzmkmrxtux
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    brulrnuhcewec6hu
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    pxzs7cgymiwwlmoi
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    xwx5bkt2kfz3emx2
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input_subsample-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    6hdz76abhokogbxk
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    table1-cohort_prevax
    Status:
    Failed
    Job identifier:
    2t53z4xukt33n2uw
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    xls5bdnyrizmmelp
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    dpndubuxeqrdixnl
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    venn-cohort_prevax
    Status:
    Failed
    Job identifier:
    35efuvj43cnbszug
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    pyruck2xkpsldxo4
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    4y7q7j7p3izc3cmi
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    rsmol5q2frhwkpqh
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    wvyftoa27jtdprz4
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    bskigge5t465wmt4
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    jbu5f4skrpsvrume
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    bg3kpv53agt2gdtp
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_X_model_output-main
    Status:
    Failed
    Job identifier:
    ndafzv7z4h2qw6ks
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    ofht4tv6azd74kma
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_X_model_output-sub_covidhospital
    Status:
    Failed
    Job identifier:
    u5h4jyko7tduq67m
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_union_model_output-sub_covidhospital
    Status:
    Failed
    Job identifier:
    g5dqkijbzuz7xugx
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    mhhdtwgrqhuls3sn
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    xh54nlqhyjy2qazj
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    ca27doosygcsxg6i
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    45eztdxc7xs636ot
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    zxayezq26l47hewz
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    zesdnzpjklqxopro
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    variable_selection_output-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    kxc7k3teps3eohma
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_union_model_output-main
    Status:
    Failed
    Job identifier:
    7kbetyuksl67zued
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    gwtte5z45lgj67rt
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    326abs5hqd7kstfk
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    il6u4dygpnssktwa
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    md7ldr2abxs772kc
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    e6fcajybpjzj6ttp
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    table1-cohort_prevax_subsample
    Status:
    Failed
    Job identifier:
    nwqpxhg2zu7wfgap
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    yvgspoagg6ksa352
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    263bjhxjz5gsl5bb
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_var_selection-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    eslkxb2lzg7tpcsi
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_var_selection-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    ynd7vygmrfauwvc2
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    fi4egwmrcfpvq3hm
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    variable_selection_output-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    357kyhk2lw2kqb7e
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    yovnvr56tkq5lg5o
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    variable_selection_output-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    32heqiy4wpsw3jif
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_model_output-sub_covidhospital
    Status:
    Failed
    Job identifier:
    burdasriopcgj2cj
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    jpzjknwkbgc7h4aq
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    post_hoc_vars_cohort_prevax
    Status:
    Failed
    Job identifier:
    d72rv3xatv6kwwjg
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    unconfoundedness_test-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    qgpvnqdza2mk3oy7
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    5uqbt4d2azydt37e
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    unconfoundedness_test-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    e72zsohx2hjdgnej
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    sumckrljqmgbkhy5
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_model_output-sub_covidhospital
    Status:
    Failed
    Job identifier:
    23hymnmbtftzyjko
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make-table1-output
    Status:
    Failed
    Job identifier:
    s2w46x2xlsdohebq
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_lasso_model_output-main
    Status:
    Failed
    Job identifier:
    fhmbeiz4if3vkzqr
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    x5lgwd4xlcfbppp4
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    table2-cohort_prevax-sub_covidhospital
    Status:
    Failed
    Job identifier:
    wwfnmubco46o4tm4
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    5wrjojlnvr2eca5t
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    4bjd5pi6glzifpfl
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    dcgmcaol6rmri4jx
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make-venn-output
    Status:
    Failed
    Job identifier:
    szmknltonsp7ljxg
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-ami
    Status:
    Failed
    Job identifier:
    jjiedo7ms7hyexwb
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_var_selection-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    humwqgkhnegvurfm
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    xbcj4dbsqtc4343f
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    qh46cj2jrc3vledy
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_X_cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    22hlynhwu6lwiyaz
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    qltahr5ujnih52gs
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    lasso_cox_ipw-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    jdtbeufw6sscuhzk
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    acfkjxln633rpnx6
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_TRUE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    pp76istfusm4j7fj
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_ipw-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    vpsbmb6cpoxgh4d2
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_X_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    5aw7xjuij7dime63
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_ipw-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    eiacuc2d2cg5p7va
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input-cohort_prevax-sub_covidhospital_FALSE-stroke_sahhs
    Status:
    Failed
    Job identifier:
    gdtbhspmda4y24fs
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_union_cox_ipw-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    6gwui5i6m4ooef4t
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_model_input-cohort_prevax-main-ami
    Status:
    Failed
    Job identifier:
    ff5j5jwm6rhguhqn
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_model_input-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    4zyregl2udjyoxet
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    make_lasso_cox_model-cohort_prevax-sub_covidhospital_TRUE-ami
    Status:
    Failed
    Job identifier:
    zit5nmxqog6m3pog
    Status message:
    dependency_failed: Not starting as dependency failed
  • Action:
    make_model_output-main
    Status:
    Failed
    Job identifier:
    k6latk6cgetfkyqj
    Status message:
    cancelled_by_user: Cancelled by user
  • Action:
    lasso_var_selection-cohort_prevax-main-stroke_sahhs
    Status:
    Failed
    Job identifier:
    4xwduwmy7snfwgyk
    Status message:
    cancelled_by_user: Cancelled by user

Pipeline

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Job statistics

Status Count Percentage
Pending 0 0%
Running 1 1.1%
Succeeded 5 5.3%
Failed 88 93.6%

93 / 94 (98.9%) complete

Timeline

  • Created:

  • Started:

  • Runtime: 34:46:26

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Running
Backend
TPP
Workspace
post-covid-cvd-missingness-methods-v1
Requested by
Emma Tarmey
Branch
main
Force run dependencies
Yes
Git commit hash
da0daaa
Requested actions
  • run_all

Code comparison

Compare the code used in this job request