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Job request: 23215

Organisation:
University of Bristol
Workspace:
booster-effectiveness-autumn-2022
ID:
mebycb3fukhz4nxc
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Paul Madley-Dowd requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    match_controlpotential_riskscore_i_1
    Status:
    Succeeded
    Job identifier:
    2yiextf5aqvrf2cz
  • Action:
    extract_controlactual_riskscore_i_1
    Status:
    Succeeded
    Job identifier:
    nc5dzrxhnnjqomfv
  • Action:
    process_controlactual_riskscore_i_1
    Status:
    Succeeded
    Job identifier:
    l6aexzdxamjokdz5
  • Action:
    match_controlactual_riskscore_i_1
    Status:
    Succeeded
    Job identifier:
    4bnfvq3qdn77exxi
  • Action:
    extract_controlpotential_riskscore_i_2
    Status:
    Succeeded
    Job identifier:
    tmco5vlhgwlcxhwo
  • Action:
    process_controlpotential_riskscore_i_2
    Status:
    Succeeded
    Job identifier:
    cxjdgn7t2ctcc5hu
  • Action:
    match_controlpotential_riskscore_i_2
    Status:
    Succeeded
    Job identifier:
    z5ubaxf6pqdhageb
  • Action:
    extract_controlactual_riskscore_i_2
    Status:
    Succeeded
    Job identifier:
    e4d4oay3ivwhhj7c
  • Action:
    process_controlactual_riskscore_i_2
    Status:
    Succeeded
    Job identifier:
    b6zab5ipjw3dvmrh
  • Action:
    match_controlactual_riskscore_i_2
    Status:
    Succeeded
    Job identifier:
    6ny46e5bj5p556m7
  • Action:
    extract_controlpotential_riskscore_i_3
    Status:
    Succeeded
    Job identifier:
    wcxjdcoa27b5jp5h
  • Action:
    process_controlpotential_riskscore_i_3
    Status:
    Succeeded
    Job identifier:
    5yibwdtxs35uzf4y
  • Action:
    match_controlpotential_riskscore_i_3
    Status:
    Succeeded
    Job identifier:
    hvnjv6mwnxpbgq4z
  • Action:
    extract_controlactual_riskscore_i_3
    Status:
    Succeeded
    Job identifier:
    3qle4hftgywsipgi
  • Action:
    process_controlactual_riskscore_i_3
    Status:
    Succeeded
    Job identifier:
    6mioe7iuv4vv6432
  • Action:
    match_controlactual_riskscore_i_3
    Status:
    Succeeded
    Job identifier:
    pia6nlufbq7howod
  • Action:
    extract_controlpotential_riskscore_i_4
    Status:
    Succeeded
    Job identifier:
    cnowzjy7cpsbgfk4
  • Action:
    process_controlpotential_riskscore_i_4
    Status:
    Succeeded
    Job identifier:
    ydyw2haday26aqse
  • Action:
    match_controlpotential_riskscore_i_4
    Status:
    Succeeded
    Job identifier:
    e5l7d4zu3dcsqwe5
  • Action:
    extract_controlactual_riskscore_i_4
    Status:
    Succeeded
    Job identifier:
    2n7rhckzl3vjtujk
  • Action:
    process_controlactual_riskscore_i_4
    Status:
    Succeeded
    Job identifier:
    dcp3zk4zz4nxxexz
  • Action:
    match_controlactual_riskscore_i_4
    Status:
    Succeeded
    Job identifier:
    a2v24v775tm3j7c2
  • Action:
    extract_controlpotential_riskscore_i_5
    Status:
    Succeeded
    Job identifier:
    a6qnbi3fdyxbk6bj
  • Action:
    process_controlpotential_riskscore_i_5
    Status:
    Succeeded
    Job identifier:
    mqzex2jpyvqogqrw
  • Action:
    match_controlpotential_riskscore_i_5
    Status:
    Succeeded
    Job identifier:
    gbbr774ezhbgmgzw
  • Action:
    extract_controlactual_riskscore_i_5
    Status:
    Succeeded
    Job identifier:
    5bzbhl27my7ero2l
  • Action:
    process_controlactual_riskscore_i_5
    Status:
    Succeeded
    Job identifier:
    3rxzqkivjgw3h7i3
  • Action:
    match_controlactual_riskscore_i_5
    Status:
    Succeeded
    Job identifier:
    or4mmvydmgzdhnaz
  • Action:
    extract_controlpotential_riskscore_i_6
    Status:
    Succeeded
    Job identifier:
    tuppcisbklagzxnn
  • Action:
    process_controlpotential_riskscore_i_6
    Status:
    Succeeded
    Job identifier:
    yg2aktvzmvupurty
  • Action:
    match_controlpotential_riskscore_i_6
    Status:
    Succeeded
    Job identifier:
    oqkhkr5ux6gxs6uj
  • Action:
    extract_controlactual_riskscore_i_6
    Status:
    Succeeded
    Job identifier:
    n5v6lnwui74eiw6q
  • Action:
    process_controlactual_riskscore_i_6
    Status:
    Succeeded
    Job identifier:
    xwmwxxdvvyuqrt3y
  • Action:
    match_controlactual_riskscore_i_6
    Status:
    Succeeded
    Job identifier:
    2bcqndyyf6ec6tcb
  • Action:
    extract_controlpotential_riskscore_i_7
    Status:
    Succeeded
    Job identifier:
    hrt22gvpqfayyeb3
  • Action:
    process_controlpotential_riskscore_i_7
    Status:
    Succeeded
    Job identifier:
    k2mg5yhso7lhbf7f
  • Action:
    match_controlpotential_riskscore_i_7
    Status:
    Succeeded
    Job identifier:
    3g2zubkmpjr3l47b
  • Action:
    extract_controlactual_riskscore_i_7
    Status:
    Succeeded
    Job identifier:
    c2ptgqruzri2fizi
  • Action:
    process_controlactual_riskscore_i_7
    Status:
    Succeeded
    Job identifier:
    s7rmoalp34mqef6t
  • Action:
    match_controlactual_riskscore_i_7
    Status:
    Failed
    Job identifier:
    bsf7d6ui3oiouzqq
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    km_incremental_riskscore_i_agegroup_match_fracture
    Status:
    Failed
    Job identifier:
    3ww3aejsn4cqeeey
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_agegroup_match_noncoviddeath
    Status:
    Failed
    Job identifier:
    ma3maqnwxnitdbhi
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_cv_covidadmitted
    Status:
    Failed
    Job identifier:
    yp3vsyeoowxo7tob
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_cv_covidadmitted
    Status:
    Failed
    Job identifier:
    pbnep75k7j2gf6gq
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    combine_model_incremental_riskscore_i
    Status:
    Failed
    Job identifier:
    a2v5idm6eadkwp7u
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_controlpotential_riskscore_i_8
    Status:
    Failed
    Job identifier:
    yypaaqmbvnleezy3
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_agegroup_match_fracture
    Status:
    Failed
    Job identifier:
    h5lxptp3vqvdztwu
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_incremental_riskscore_i_cv_covidadmitted
    Status:
    Failed
    Job identifier:
    gttuusrlg2jhav5p
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_incremental_riskscore_i_agegroup_match_noncoviddeath
    Status:
    Failed
    Job identifier:
    st77xplwxqafgd52
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_agegroup_match_coviddeath
    Status:
    Failed
    Job identifier:
    zkgfs2dnwd2m4kz5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_cv_coviddeath
    Status:
    Failed
    Job identifier:
    khk4bn2wowhdicsj
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_incremental_riskscore_i_cv_coviddeath
    Status:
    Failed
    Job identifier:
    7h6apsfdxwlstay6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_all_coviddeath
    Status:
    Failed
    Job identifier:
    zk57f4xis6bujeie
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_all_coviddeath
    Status:
    Failed
    Job identifier:
    ktwodw6nt44y2x7m
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_incremental_riskscore_i_all_noncoviddeath
    Status:
    Failed
    Job identifier:
    v45lcee7cm5p2kgo
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_all_noncoviddeath
    Status:
    Failed
    Job identifier:
    za7kxfeak2n47ibt
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_incremental_riskscore_i_all_fracture
    Status:
    Failed
    Job identifier:
    kcar4bn6lozf6gm3
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    table1_incremental_riskscore_i
    Status:
    Failed
    Job identifier:
    446h4bo44uifzi5d
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_incremental_riskscore_i_all_coviddeath
    Status:
    Failed
    Job identifier:
    o2b7ildg5pjpnbg7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_all_noncoviddeath
    Status:
    Failed
    Job identifier:
    qukuhdzhcr65j6va
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    coverage_incremental_riskscore_i
    Status:
    Failed
    Job identifier:
    4jpezka5ff35koc7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    flowchart_incremental_riskscore_i
    Status:
    Failed
    Job identifier:
    qf3dtbspxzvity65
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    match_controlactual_riskscore_i_8
    Status:
    Failed
    Job identifier:
    hjdqaabnrqsswb4d
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_cv_noncoviddeath
    Status:
    Failed
    Job identifier:
    o6nkfvug3jrbarwz
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_agegroup_match_fracture
    Status:
    Failed
    Job identifier:
    43c6jncewddh3dff
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_cv_noncoviddeath
    Status:
    Failed
    Job identifier:
    vwoimw4iwzchsqua
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_cv_coviddeath
    Status:
    Failed
    Job identifier:
    qgwcqpspyy2dkzcw
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_incremental_riskscore_i_agegroup_match_coviddeath
    Status:
    Failed
    Job identifier:
    gl3dhq3oc7dljtf2
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_controlpotential_riskscore_i_8
    Status:
    Failed
    Job identifier:
    jgdmarqlyg2c4r3f
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_incremental_riskscore_i_all_covidadmitted
    Status:
    Failed
    Job identifier:
    ht2fqgekhx5nezyy
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_all_fracture
    Status:
    Failed
    Job identifier:
    25fxpesbsibbazbq
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_controlactual_riskscore_i_8
    Status:
    Failed
    Job identifier:
    p2u7tic75peb5ndf
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    process_controlactual_riskscore_i_8
    Status:
    Failed
    Job identifier:
    qicsbw37mlb4u7hv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_cv_fracture
    Status:
    Failed
    Job identifier:
    jmtrjgwae6v2ljpz
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_incremental_riskscore_i_cv_fracture
    Status:
    Failed
    Job identifier:
    52htsnvokryhr7zd
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_incremental_riskscore_i_cv_noncoviddeath
    Status:
    Failed
    Job identifier:
    hwlg5upgt7qb3szg
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_cv_fracture
    Status:
    Failed
    Job identifier:
    fhhndryyhc5togfv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    match_controlpotential_riskscore_i_8
    Status:
    Failed
    Job identifier:
    45dvrch6w4ggj3zw
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    km_incremental_riskscore_i_agegroup_match_covidadmitted
    Status:
    Failed
    Job identifier:
    lpqtau7xehe3qtdg
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_agegroup_match_covidadmitted
    Status:
    Failed
    Job identifier:
    y26527rcikgzssx2
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_all_covidadmitted
    Status:
    Failed
    Job identifier:
    tnxwyvuguqeepy4b
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_final_incremental_riskscore_i
    Status:
    Failed
    Job identifier:
    qewl3sizonieqins
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_all_covidadmitted
    Status:
    Failed
    Job identifier:
    fxmultuacartmmlm
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_all_fracture
    Status:
    Failed
    Job identifier:
    gydz5lkajiwbbjeu
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_agegroup_match_noncoviddeath
    Status:
    Failed
    Job identifier:
    vcbhesbysilm575k
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_unadj_incremental_riskscore_i_agegroup_match_coviddeath
    Status:
    Failed
    Job identifier:
    hic6nzj4p74zviu5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_adj_incremental_riskscore_i_agegroup_match_covidadmitted
    Status:
    Failed
    Job identifier:
    qciwisj3nf4eejqo
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 25:22:09

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
booster-effectiveness-autumn-2022
Requested by
Paul Madley-Dowd
Branch
main
Force run dependencies
No
Git commit hash
d53f576
Requested actions
  • match_controlpotential_riskscore_i_1
  • extract_controlactual_riskscore_i_1
  • process_controlactual_riskscore_i_1
  • match_controlactual_riskscore_i_1
  • extract_controlpotential_riskscore_i_2
  • process_controlpotential_riskscore_i_2
  • match_controlpotential_riskscore_i_2
  • extract_controlactual_riskscore_i_2
  • process_controlactual_riskscore_i_2
  • match_controlactual_riskscore_i_2
  • extract_controlpotential_riskscore_i_3
  • process_controlpotential_riskscore_i_3
  • match_controlpotential_riskscore_i_3
  • extract_controlactual_riskscore_i_3
  • process_controlactual_riskscore_i_3
  • match_controlactual_riskscore_i_3
  • extract_controlpotential_riskscore_i_4
  • process_controlpotential_riskscore_i_4
  • match_controlpotential_riskscore_i_4
  • extract_controlactual_riskscore_i_4
  • process_controlactual_riskscore_i_4
  • match_controlactual_riskscore_i_4
  • extract_controlpotential_riskscore_i_5
  • process_controlpotential_riskscore_i_5
  • match_controlpotential_riskscore_i_5
  • extract_controlactual_riskscore_i_5
  • process_controlactual_riskscore_i_5
  • match_controlactual_riskscore_i_5
  • extract_controlpotential_riskscore_i_6
  • process_controlpotential_riskscore_i_6
  • match_controlpotential_riskscore_i_6
  • extract_controlactual_riskscore_i_6
  • process_controlactual_riskscore_i_6
  • match_controlactual_riskscore_i_6
  • extract_controlpotential_riskscore_i_7
  • process_controlpotential_riskscore_i_7
  • match_controlpotential_riskscore_i_7
  • extract_controlactual_riskscore_i_7
  • process_controlactual_riskscore_i_7
  • match_controlactual_riskscore_i_7
  • extract_controlpotential_riskscore_i_8
  • process_controlpotential_riskscore_i_8
  • match_controlpotential_riskscore_i_8
  • extract_controlactual_riskscore_i_8
  • process_controlactual_riskscore_i_8
  • match_controlactual_riskscore_i_8
  • coverage_incremental_riskscore_i
  • flowchart_incremental_riskscore_i
  • extract_final_incremental_riskscore_i
  • table1_incremental_riskscore_i
  • km_incremental_riskscore_i_all_covidadmitted
  • cox_unadj_incremental_riskscore_i_all_covidadmitted
  • cox_adj_incremental_riskscore_i_all_covidadmitted
  • km_incremental_riskscore_i_all_coviddeath
  • cox_unadj_incremental_riskscore_i_all_coviddeath
  • cox_adj_incremental_riskscore_i_all_coviddeath
  • km_incremental_riskscore_i_all_noncoviddeath
  • cox_unadj_incremental_riskscore_i_all_noncoviddeath
  • cox_adj_incremental_riskscore_i_all_noncoviddeath
  • km_incremental_riskscore_i_all_fracture
  • cox_unadj_incremental_riskscore_i_all_fracture
  • cox_adj_incremental_riskscore_i_all_fracture
  • km_incremental_riskscore_i_agegroup_match_covidadmitted
  • cox_unadj_incremental_riskscore_i_agegroup_match_covidadmitted
  • cox_adj_incremental_riskscore_i_agegroup_match_covidadmitted
  • km_incremental_riskscore_i_agegroup_match_coviddeath
  • cox_unadj_incremental_riskscore_i_agegroup_match_coviddeath
  • cox_adj_incremental_riskscore_i_agegroup_match_coviddeath
  • km_incremental_riskscore_i_agegroup_match_noncoviddeath
  • cox_unadj_incremental_riskscore_i_agegroup_match_noncoviddeath
  • cox_adj_incremental_riskscore_i_agegroup_match_noncoviddeath
  • km_incremental_riskscore_i_agegroup_match_fracture
  • cox_unadj_incremental_riskscore_i_agegroup_match_fracture
  • cox_adj_incremental_riskscore_i_agegroup_match_fracture
  • km_incremental_riskscore_i_cv_covidadmitted
  • cox_unadj_incremental_riskscore_i_cv_covidadmitted
  • cox_adj_incremental_riskscore_i_cv_covidadmitted
  • km_incremental_riskscore_i_cv_coviddeath
  • cox_unadj_incremental_riskscore_i_cv_coviddeath
  • cox_adj_incremental_riskscore_i_cv_coviddeath
  • km_incremental_riskscore_i_cv_noncoviddeath
  • cox_unadj_incremental_riskscore_i_cv_noncoviddeath
  • cox_adj_incremental_riskscore_i_cv_noncoviddeath
  • km_incremental_riskscore_i_cv_fracture
  • cox_unadj_incremental_riskscore_i_cv_fracture
  • cox_adj_incremental_riskscore_i_cv_fracture
  • combine_model_incremental_riskscore_i

Code comparison

Compare the code used in this job request