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Job request: 23541

Organisation:
University of Bristol
Workspace:
booster-effectiveness-autumn-2022
ID:
xcpocekypm6qkcif
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Paul Madley-Dowd requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    cox_adj_comparative_riskscore_i_agegroup_match_covidadmitted
    Status:
    Succeeded
    Job identifier:
    gcd4hlohysj3rzbf
  • Action:
    cox_adj_comparative_riskscore_i_agegroup_match_coviddeath
    Status:
    Succeeded
    Job identifier:
    uczyylgeqge2rcn6
  • Action:
    cox_adj_comparative_riskscore_i_agegroup_match_fracture
    Status:
    Succeeded
    Job identifier:
    ub6oroiepkuidzaz
  • Action:
    cox_adj_comparative_riskscore_i_agegroup_match_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    md2ykwon4efbhrpl
  • Action:
    cox_adj_comparative_riskscore_i_all_covidadmitted
    Status:
    Succeeded
    Job identifier:
    35qrxv4nbdklulzs
  • Action:
    cox_adj_comparative_riskscore_i_all_coviddeath
    Status:
    Succeeded
    Job identifier:
    r63cn32o6qhdowhk
  • Action:
    cox_adj_comparative_riskscore_i_all_fracture
    Status:
    Succeeded
    Job identifier:
    ewimsuyc3hj3p6ij
  • Action:
    cox_adj_comparative_riskscore_i_all_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    vq7qsnn7pmjzh7vf
  • Action:
    cox_adj_comparative_riskscore_i_cv_covidadmitted
    Status:
    Succeeded
    Job identifier:
    sskthobrujtim2jx
  • Action:
    cox_adj_comparative_riskscore_i_cv_coviddeath
    Status:
    Succeeded
    Job identifier:
    te6csj4r7yte3viu
  • Action:
    cox_adj_comparative_riskscore_i_cv_fracture
    Status:
    Succeeded
    Job identifier:
    br427547yvny3xpl
  • Action:
    cox_adj_comparative_riskscore_i_cv_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    qkyj6i2pil7tcugu
  • Action:
    cox_adj_incremental_riskscore_i_agegroup_match_covidadmitted
    Status:
    Succeeded
    Job identifier:
    tw47eh4y7jshywdm
  • Action:
    cox_adj_incremental_riskscore_i_agegroup_match_coviddeath
    Status:
    Succeeded
    Job identifier:
    jy3vg6vgo4v2a4qj
  • Action:
    cox_adj_incremental_riskscore_i_agegroup_match_fracture
    Status:
    Succeeded
    Job identifier:
    z7tl6boivv2b6kpr
  • Action:
    cox_adj_incremental_riskscore_i_agegroup_match_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    2dudjsobhr43hc64
  • Action:
    cox_adj_incremental_riskscore_i_all_covidadmitted
    Status:
    Failed
    Job identifier:
    iygjospxmz67zu3a
    Error:
    nonzero_exit: Job exited with an error: Job ran out of memory (limit was 128.00GB)
  • Action:
    cox_adj_incremental_riskscore_i_all_coviddeath
    Status:
    Failed
    Job identifier:
    klixcimfwkwbkzlf
    Error:
    nonzero_exit: Job exited with an error: Job killed by OpenSAFELY admin or memory limits
  • Action:
    cox_adj_incremental_riskscore_i_all_fracture
    Status:
    Succeeded
    Job identifier:
    sz33em5y4uollcci
  • Action:
    cox_adj_incremental_riskscore_i_all_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    6wqbnyskaohgpzgm
  • Action:
    cox_adj_incremental_riskscore_i_cv_covidadmitted
    Status:
    Succeeded
    Job identifier:
    iwmbx7x67fta4tbh
  • Action:
    cox_adj_incremental_riskscore_i_cv_coviddeath
    Status:
    Succeeded
    Job identifier:
    4uebymca4u7wbqxk
  • Action:
    cox_adj_incremental_riskscore_i_cv_fracture
    Status:
    Succeeded
    Job identifier:
    bdg3wlxe2rslf5qm
  • Action:
    cox_adj_incremental_riskscore_i_cv_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    zkyw5kfupmqpymgq
  • Action:
    cox_unadj_comparative_riskscore_i_agegroup_match_covidadmitted
    Status:
    Succeeded
    Job identifier:
    f3k22rag73dr7trg
  • Action:
    cox_unadj_comparative_riskscore_i_agegroup_match_coviddeath
    Status:
    Succeeded
    Job identifier:
    ndr2q2h2f6jetxim
  • Action:
    cox_unadj_comparative_riskscore_i_agegroup_match_fracture
    Status:
    Succeeded
    Job identifier:
    o3mejw25uhgsanl3
  • Action:
    cox_unadj_comparative_riskscore_i_agegroup_match_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    ukpsoft5nshen3de
  • Action:
    cox_unadj_comparative_riskscore_i_all_covidadmitted
    Status:
    Succeeded
    Job identifier:
    7sadyp6udvcmme6a
  • Action:
    cox_unadj_comparative_riskscore_i_all_coviddeath
    Status:
    Succeeded
    Job identifier:
    o3gxbtguv6u2iyhk
  • Action:
    cox_unadj_comparative_riskscore_i_all_fracture
    Status:
    Succeeded
    Job identifier:
    vahqjapddls4tbg7
  • Action:
    cox_unadj_comparative_riskscore_i_all_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    shlnvmwpg7eifwix
  • Action:
    cox_unadj_comparative_riskscore_i_cv_covidadmitted
    Status:
    Succeeded
    Job identifier:
    umievvwmaspta2wy
  • Action:
    cox_unadj_comparative_riskscore_i_cv_coviddeath
    Status:
    Succeeded
    Job identifier:
    xesxdbamilsrqpgm
  • Action:
    cox_unadj_comparative_riskscore_i_cv_fracture
    Status:
    Succeeded
    Job identifier:
    3t3jqeqn6cw3pyq6
  • Action:
    cox_unadj_comparative_riskscore_i_cv_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    cynq5kiiw7m6u5vp
  • Action:
    cox_unadj_incremental_riskscore_i_agegroup_match_covidadmitted
    Status:
    Succeeded
    Job identifier:
    xzm3ntu3lvco5nkh
  • Action:
    cox_unadj_incremental_riskscore_i_agegroup_match_coviddeath
    Status:
    Succeeded
    Job identifier:
    gcntyx5e5qemzi7x
  • Action:
    cox_unadj_incremental_riskscore_i_agegroup_match_fracture
    Status:
    Succeeded
    Job identifier:
    dxerc5qsu6xkoo5p
  • Action:
    cox_unadj_incremental_riskscore_i_agegroup_match_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    7nvbcgdi3iyyq5q6
  • Action:
    cox_unadj_incremental_riskscore_i_all_covidadmitted
    Status:
    Succeeded
    Job identifier:
    dlepznvlmknlcvea
  • Action:
    cox_unadj_incremental_riskscore_i_all_coviddeath
    Status:
    Succeeded
    Job identifier:
    apv66pxjqb5fizia
  • Action:
    combine_model_comparative_riskscore_i
    Status:
    Failed
    Job identifier:
    6yasycbj62iqkgut
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/comparative_riskscore_i/model/*.png
  • Action:
    cox_unadj_incremental_riskscore_i_all_fracture
    Status:
    Succeeded
    Job identifier:
    3nq3ylepwrggxqvk
  • Action:
    cox_unadj_incremental_riskscore_i_all_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    dme4hb32agunyzwi
  • Action:
    cox_unadj_incremental_riskscore_i_cv_covidadmitted
    Status:
    Succeeded
    Job identifier:
    qmyaf5seevlcsf7z
  • Action:
    cox_unadj_incremental_riskscore_i_cv_coviddeath
    Status:
    Succeeded
    Job identifier:
    ljsts5l4uninoe7t
  • Action:
    cox_unadj_incremental_riskscore_i_cv_fracture
    Status:
    Succeeded
    Job identifier:
    t4n5ppasmcyexhgq
  • Action:
    cox_unadj_incremental_riskscore_i_cv_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    w5ljbpf7smwgh47g
  • Action:
    km_incremental_riskscore_i_agegroup_match_covidadmitted
    Status:
    Succeeded
    Job identifier:
    qmvtmjgls7rlqxql
  • Action:
    km_incremental_riskscore_i_agegroup_match_coviddeath
    Status:
    Succeeded
    Job identifier:
    fnjogalaeu7f5jey
  • Action:
    km_incremental_riskscore_i_agegroup_match_fracture
    Status:
    Succeeded
    Job identifier:
    rvevgb52rart2ral
  • Action:
    km_incremental_riskscore_i_agegroup_match_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    j32omftiqwmsfa4m
  • Action:
    km_incremental_riskscore_i_all_covidadmitted
    Status:
    Succeeded
    Job identifier:
    iwsewi2zskxzy4mv
  • Action:
    km_incremental_riskscore_i_all_coviddeath
    Status:
    Succeeded
    Job identifier:
    iyxp5ef2dfmakcml
  • Action:
    km_incremental_riskscore_i_all_fracture
    Status:
    Succeeded
    Job identifier:
    tnglqmrgmqlhjfek
  • Action:
    km_incremental_riskscore_i_all_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    7urgaiupojhvemeu
  • Action:
    km_incremental_riskscore_i_cv_covidadmitted
    Status:
    Succeeded
    Job identifier:
    ndafra7po2h23yxj
  • Action:
    km_incremental_riskscore_i_cv_coviddeath
    Status:
    Succeeded
    Job identifier:
    hlf3ae6nh4ff5g3n
  • Action:
    km_incremental_riskscore_i_cv_fracture
    Status:
    Succeeded
    Job identifier:
    fd26tmp33mwd52ba
  • Action:
    km_incremental_riskscore_i_cv_noncoviddeath
    Status:
    Succeeded
    Job identifier:
    nwcv3ywttbk35prc
  • Action:
    combine_model_incremental_riskscore_i
    Status:
    Failed
    Job identifier:
    irshjicn7ppluigc
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 47:20:22

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
booster-effectiveness-autumn-2022
Requested by
Paul Madley-Dowd
Branch
main
Force run dependencies
No
Git commit hash
66b13d9
Requested actions
  • cox_unadj_comparative_riskscore_i_all_covidadmitted
  • cox_adj_comparative_riskscore_i_all_covidadmitted
  • cox_unadj_comparative_riskscore_i_all_coviddeath
  • cox_adj_comparative_riskscore_i_all_coviddeath
  • cox_unadj_comparative_riskscore_i_all_noncoviddeath
  • cox_adj_comparative_riskscore_i_all_noncoviddeath
  • cox_unadj_comparative_riskscore_i_all_fracture
  • cox_adj_comparative_riskscore_i_all_fracture
  • cox_unadj_comparative_riskscore_i_agegroup_match_covidadmitted
  • cox_adj_comparative_riskscore_i_agegroup_match_covidadmitted
  • cox_unadj_comparative_riskscore_i_agegroup_match_coviddeath
  • cox_adj_comparative_riskscore_i_agegroup_match_coviddeath
  • cox_unadj_comparative_riskscore_i_agegroup_match_noncoviddeath
  • cox_adj_comparative_riskscore_i_agegroup_match_noncoviddeath
  • cox_unadj_comparative_riskscore_i_agegroup_match_fracture
  • cox_adj_comparative_riskscore_i_agegroup_match_fracture
  • cox_unadj_comparative_riskscore_i_cv_covidadmitted
  • cox_adj_comparative_riskscore_i_cv_covidadmitted
  • cox_unadj_comparative_riskscore_i_cv_coviddeath
  • cox_adj_comparative_riskscore_i_cv_coviddeath
  • cox_unadj_comparative_riskscore_i_cv_noncoviddeath
  • cox_adj_comparative_riskscore_i_cv_noncoviddeath
  • cox_unadj_comparative_riskscore_i_cv_fracture
  • cox_adj_comparative_riskscore_i_cv_fracture
  • combine_model_comparative_riskscore_i
  • km_incremental_riskscore_i_all_covidadmitted
  • cox_unadj_incremental_riskscore_i_all_covidadmitted
  • cox_adj_incremental_riskscore_i_all_covidadmitted
  • km_incremental_riskscore_i_all_coviddeath
  • cox_unadj_incremental_riskscore_i_all_coviddeath
  • cox_adj_incremental_riskscore_i_all_coviddeath
  • km_incremental_riskscore_i_all_noncoviddeath
  • cox_unadj_incremental_riskscore_i_all_noncoviddeath
  • cox_adj_incremental_riskscore_i_all_noncoviddeath
  • km_incremental_riskscore_i_all_fracture
  • cox_unadj_incremental_riskscore_i_all_fracture
  • cox_adj_incremental_riskscore_i_all_fracture
  • km_incremental_riskscore_i_agegroup_match_covidadmitted
  • cox_unadj_incremental_riskscore_i_agegroup_match_covidadmitted
  • cox_adj_incremental_riskscore_i_agegroup_match_covidadmitted
  • km_incremental_riskscore_i_agegroup_match_coviddeath
  • cox_unadj_incremental_riskscore_i_agegroup_match_coviddeath
  • cox_adj_incremental_riskscore_i_agegroup_match_coviddeath
  • km_incremental_riskscore_i_agegroup_match_noncoviddeath
  • cox_unadj_incremental_riskscore_i_agegroup_match_noncoviddeath
  • cox_adj_incremental_riskscore_i_agegroup_match_noncoviddeath
  • km_incremental_riskscore_i_agegroup_match_fracture
  • cox_unadj_incremental_riskscore_i_agegroup_match_fracture
  • cox_adj_incremental_riskscore_i_agegroup_match_fracture
  • km_incremental_riskscore_i_cv_covidadmitted
  • cox_unadj_incremental_riskscore_i_cv_covidadmitted
  • cox_adj_incremental_riskscore_i_cv_covidadmitted
  • km_incremental_riskscore_i_cv_coviddeath
  • cox_unadj_incremental_riskscore_i_cv_coviddeath
  • cox_adj_incremental_riskscore_i_cv_coviddeath
  • km_incremental_riskscore_i_cv_noncoviddeath
  • cox_unadj_incremental_riskscore_i_cv_noncoviddeath
  • cox_adj_incremental_riskscore_i_cv_noncoviddeath
  • km_incremental_riskscore_i_cv_fracture
  • cox_unadj_incremental_riskscore_i_cv_fracture
  • cox_adj_incremental_riskscore_i_cv_fracture
  • combine_model_incremental_riskscore_i

Code comparison

Compare the code used in this job request