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Job request: 15078

Organisation:
University of Bristol
Workspace:
vaccine-effectiveness-4dose
ID:
bxvx7psgqwerro7o
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Elsie Horne requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    extract_exploratory
    Status:
    Status: Succeeded
    Job identifier:
    6zhdmp4x632x5j6b
  • Action:
    sankey
    Status:
    Status: Failed
    Job identifier:
    qqro3eehouniierf

Pipeline

Show project.yaml 
version: '3.0'

expectations:

  population_size: 100000

actions:

  ## # # # # # # # # # # # # # # # # # # # 
  ## DO NOT EDIT project.yaml DIRECTLY 
  ## This file is created by create-project.R 
  ## Edit and run create-project.R to update the project.yaml 
  ## # # # # # # # # # # # # # # # # # # # 
  ##   
  ## # # # # # # # # # # # # # # # # # # # 
  ## Extract and process data for exploratory analysis 
  ## # # # # # # # # # # # # # # # # # # # 

  extract_exploratory:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_exploratory
      --output-file output/exploratory/extract/input_exploratory.feather
    outputs:
      highly_sensitive:
        extract: output/exploratory/extract/input_exploratory.feather

  sankey:
    run: r:latest analysis/exploratory/sankey.R
    needs:
    - extract_exploratory
    outputs:
      moderately_sensitive:
        links: output/exploratory/links.csv

  ## #### End ####

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 04:55:34

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Workspace
vaccine-effectiveness-4dose
Requested by
Elsie Horne
Branch
main
Force run dependencies
No
Git commit hash
f8b4840
Requested actions
  • extract_exploratory
  • sankey

Code comparison

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