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Job request: 15184

Organisation:
University of Bristol
Workspace:
vaccine-effectiveness-4dose
ID:
o2wdfa3gvfog4ixm
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Elsie Horne requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    extract_exploratory
    Status:
    Status: Failed
    Job identifier:
    tjqn2skwfmrvoydz
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    sankey
    Status:
    Status: Failed
    Job identifier:
    aqph4uxnhbxmnxlj
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: '3.0'

expectations:

  population_size: 100000

actions:

  ## # # # # # # # # # # # # # # # # # # # 
  ## DO NOT EDIT project.yaml DIRECTLY 
  ## This file is created by create-project.R 
  ## Edit and run create-project.R to update the project.yaml 
  ## # # # # # # # # # # # # # # # # # # # 
  ##   
  ## # # # # # # # # # # # # # # # # # # # 
  ## Extract and process data for exploratory analysis 
  ## # # # # # # # # # # # # # # # # # # # 

  extract_exploratory:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_exploratory
      --output-file output/exploratory/extract/input_exploratory.feather
    outputs:
      highly_sensitive:
        extract: output/exploratory/extract/input_exploratory.feather

  sankey:
    run: r:latest analysis/exploratory/sankey.R
    needs:
    - extract_exploratory
    outputs:
      moderately_sensitive:
        csv: output/exploratory/*.csv
        txt: output/exploratory/*.txt

  ## #### End ####

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:15:42

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
vaccine-effectiveness-4dose
Requested by
Elsie Horne
Branch
main
Force run dependencies
No
Git commit hash
be77d18
Requested actions
  • extract_exploratory
  • sankey

Code comparison

Compare the code used in this job request