Job request: 14601
- Organisation:
- University of Bristol
- Workspace:
- vax-fourth-dose-rd
- ID:
- 2cxd7rhdz2wd2qne
This page shows the technical details of what happened when the authorised researcher Andrea Schaffer requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
7wuomxf7v4avijtl
Pipeline
Show project.yaml
######################################
# This script defines the project pipeline - it specifies the execution orders for all the code in this
# repo using a series of actions.
######################################
version: '3.0'
expectations:
population_size: 10000
actions:
generate_study_pop:
run: cohortextractor:latest generate_cohort
--study-definition study_definition_fourth
--output-format=feather
outputs:
highly_sensitive:
cohort: output/input_fourth.feather
cumulative_fourth_dose:
run: r:latest analysis/descriptive/cumulative_vax_byage.R
needs: [generate_study_pop]
outputs:
moderately_sensitive:
measure_csv: output/cumulative_rates/final_*.csv
plot: output/cumulative_rates/plot_*.png
covid_outcomes:
run: r:latest analysis/descriptive/covid_outcomes_byage.R
needs: [generate_study_pop]
outputs:
moderately_sensitive:
measure_csv: output/covid_outcomes/covid_*.csv
plot: output/covid_outcomes/plot_outcomes_byage.png
flu_vax:
run: r:latest analysis/descriptive/flu_vax_byage.R
needs: [generate_study_pop]
outputs:
moderately_sensitive:
measure_csv: output/cumulative_rates/flu_*.csv
plot: output/cumulative_rates/plot_flu_vax_byage.png
demographics:
run: r:latest analysis/descriptive/demographics_byage.R
needs: [generate_study_pop]
outputs:
moderately_sensitive:
measure_csv: output/variables_by_age/demographics_*.csv
plot: output/variables_by_age/plot_*.png
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 00:00:50
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- vax-fourth-dose-rd
- Requested by
- Andrea Schaffer
- Branch
- main
- Force run dependencies
- No
- Git commit hash
- 0480449
- Requested actions
-
-
covid_outcomes
-
Code comparison
Compare the code used in this Job Request