Job Request: 2573 lbsyi7e2ta2bnpk6

This page shows the technical details of what happened when authorised researcher dgrint requested one or more actions to be run against real patient data in the SGTF 617 project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

State

State is inferred from the related Jobs
Status: succeeded

Config

Backend: tpp
Workspace: sgtf-617-research (master)
Creator: dgrint
Force run dependencies?: False
Git Commit Hash: 71713fb
Requested Actions:
  • generate_cohort
  • crMAIN
  • anTAB1

Timings

Created: 1 month, 2 weeks ago
Started: 1 month, 2 weeks ago
Finished: 1 month, 2 weeks ago
Runtime: 01:30:28

Pipeline

version: '3.0'

expectations:
population_size: 50000

actions:

generate_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition
outputs:
highly_sensitive:
cohort: output/input.csv

crMAIN:
run: stata-mp:latest analysis/cr_analysis_dataset.do
needs: [generate_cohort]
outputs:
moderately_sensitive:
log: logs/cr_analysis_dataset.log
highly_sensitive:
data: output/cr_analysis_dataset.dta

anTAB1:
run: stata-mp:latest analysis/an_table1.do
needs: [crMAIN]
outputs:
moderately_sensitive:
log: logs/an_table1.log
table1text: output/table1.txt
table1xlsx: output/table1.xlsx
figure1: output/alpha_ageband.svg
figure2: output/delta_ageband.svg
figure3: output/delta_cumcase.svg
figure4: output/alpha_cumcase.svg
figure5: output/ae_hist.svg
figure6: output/ae_kden.svg

Jobs

ID Status Action
gejmju4uzqybum2l succeeded generate_cohort View
h23gjlnakl4jgh2j succeeded crMAIN View
4bz7mtoqxfq4ynyz succeeded anTAB1 View