Job Request: 2972 auyn2s5j5q45f3y7

This page shows the technical details of what happened when authorised researcher Kev Wing requested one or more actions to be run against real patient data in the HH Classification project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

State

State is inferred from the related Jobs
Status: succeeded

Config

Backend: tpp
Workspace: hh-classification-research (master)
Creator: kevwing
Force run dependencies?: False
Git Commit Hash: 9142b14
Requested Actions:
  • 06_hhClassif_an_multivariable_analysis_eth5Interaction_W2
  • 08_hhClassif_an_mv_analysis_perEth5Group_HR_table_W2

Timings

Created: 1 week ago
Started: 1 week ago
Finished: 6 days, 18 hours ago
Runtime: 09:02:38

Pipeline

version: "3.0"


expectations:
population_size: 100000

actions:
generate_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition
outputs:
highly_sensitive:
cohort: output/input.csv

W2_generate_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition_W2
outputs:
highly_sensitive:
cohort: output/input_W2.csv

01_hhClassif_cr_analysis_dataset:
run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do MAIN
needs: [generate_cohort]
outputs:
highly_sensitive:
allHHSizes: output/allHH_beforeDropping_largerThan10_MAIN.dta
allHHSizes1_20: output/allHH_sizedBetween1And20_MAIN.dta
allvars: output/hhClassif_analysis_datasetMAIN.dta
allvarsEthMiss: output/hhClassif_analysis_dataset_with_missing_ethnicityMAIN.dta
allVarsAgeSpline: output/hhClassif_analysis_dataset_ageband_*MAIN.dta
allVarsAgeStratStset: output/hhClassif_analysis_dataset_STSET_*_ageband_*MAIN.dta
moderately_sensitive:
log: logs/01_hhClassif_cr_analysis_dataset.log

01_hhClassif_cr_analysis_dataset_W2:
run: stata-mp:latest analysis/01_hhClassif_cr_analysis_dataset.do W2
needs: [W2_generate_cohort]
outputs:
highly_sensitive:
allHHSizes: output/allHH_beforeDropping_largerThan10_W2.dta
allHHSizes1_20: output/allHH_sizedBetween1And20_W2.dta
allvars: output/hhClassif_analysis_datasetW2.dta
allvarsEthMiss: output/hhClassif_analysis_dataset_with_missing_ethnicityW2.dta
allVarsAgeSpline: output/hhClassif_analysis_dataset_ageband_*W2.dta
allVarsAgeStratStset: output/hhClassif_analysis_dataset_STSET_*_ageband_*W2.dta
moderately_sensitive:
log: logs/01_hhClassif_cr_analysis_dataset_W2.log

02_hhClassif_an_data_checks:
run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/02_hhClassif_an_data_checks.log

02_hhClassif_an_data_checks_W2:
run: stata-mp:latest analysis/02_hhClassif_an_data_checks.do W2
needs: [01_hhClassif_cr_analysis_dataset_W2]
outputs:
moderately_sensitive:
log: logs/02_hhClassif_an_data_checks_W2.log

03a_hhClassif_an_hist_hhSizebyEthnicity:
run: stata-mp:latest analysis/03a_hhClassif_an_hist_hhSizebyEthnicity.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/03a_hhClassif_an_hist_hhSizebyEthnicity_MAIN.log
gph1: output/overallHHSizeDist_MAIN.gph
gph2: output/whiteHHSizeDist_MAIN.gph
gph3: output/southAsianHHSizeDist_MAIN.gph
gph4: output/blackHHSizeDist_MAIN.gph
gph5: output/HHdistHists_MAIN.pdf

03b_hhClassif_an_hist_ov65hhSizebyEthnicity:
run: stata-mp:latest analysis/03b_hhClassif_an_hist_ov65hhSizebyEthnicity.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/03b_hhClassif_an_hist_ov65hhSizebyEthnicity_MAIN.log
gph1: output/ov65OverallHHSizeDist_MAIN.gph
gph2: output/ov65WhiteHHSizeDist_MAIN.gph
gph3: output/ov65SouthAsianHHSizeDist_MAIN.gph
gph4: output/ov65BlackHHSizeDist_MAIN.gph
gph5: output/ov65HHdistHists_MAIN.pdf

03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge:
run: stata-mp:latest analysis/03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
highly_sensitive:
over65OnlyHH: output/housesWithOnly65yrOldsInThem_MAIN.dta
moderately_sensitive:
log: logs/03c_hhClassif_an_hist_ov65hhSizebyEthnicity_woAllSameAge_MAIN.log
gph1: output/ov65OverallHHSizeDist_woAllSameAge_MAIN.gph
gph2: output/ov65WhiteHHSizeDist_woAllSameAge_MAIN.gph
gph3: output/ov65SouthAsianHHSizeDist_woAllSameAge_MAIN.gph
gph4: output/ov65BlackHHSizeDist_woAllSameAge_MAIN.gph
gph5: output/ov65HHdistHists_woAllSameAge_MAIN.pdf

03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban:
run: stata-mp:latest analysis/03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/03d_hhClassif_an_hist_ov65hhSizebyEthnicity_RuralUrban_MAIN.log
gph1: output/ov65OverallHHSizeDist_*_MAIN.gph
gph2: output/ov65WhiteHHSizeDist_*_MAIN.gph
gph3: output/ov65SouthAsianHHSizeDist_*_MAIN.gph
gph4: output/ov65BlackHHSizeDist_*_MAIN.gph
gph5: output/ov65HHdistHists_*_MAIN.pdf

03e_hhClassif_an_descriptive_table_1:
run: stata-mp:latest analysis/03e_hhClassif_an_descriptive_table_1.do MAIN
needs: [01_hhClassif_cr_analysis_dataset]
outputs:
moderately_sensitive:
log: logs/03e_hhClassif_an_descriptive_table_1_MAIN.log
tableTxt: output/table1_hhClassifMAIN.txt
tableExcel: output/table1_hhClassifMAIN.xlsx

03e_hhClassif_an_descriptive_table_1_W2:
run: stata-mp:latest analysis/03e_hhClassif_an_descriptive_table_1.do W2
needs: [01_hhClassif_cr_analysis_dataset_W2]
outputs:
moderately_sensitive:
log: logs/03e_hhClassif_an_descriptive_table_1_W2.log
tableTxt: output/table1_hhClassifW2.txt
tableExcel: output/table1_hhClassifW2.xlsx

04_hhClassif_an_univariable_analysis:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/04_hhClassif_an_univariable_analysis.do MAIN
outputs:
moderately_sensitive:
log: logs/04_hhClassif_an_univariable_analysis_MAIN.log
data: output/hhClassif_univariableAnalysis_*_ageband_*MAIN.ster

04_hhClassif_an_univariable_analysis_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/04_hhClassif_an_univariable_analysis.do W2
outputs:
moderately_sensitive:
log: logs/04_hhClassif_an_univariable_analysis_W2.log
data: output/hhClassif_univariableAnalysis_*_ageband_*W2.ster

05_hhClassif_an_multivariable_analysis:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/05_hhClassif_an_multivariable_analysis.do MAIN
outputs:
moderately_sensitive:
log: logs/05_hhClassif_an_multivariable_analysis_MAIN.log
data: output/hhClassif_multivariableAllEthnicities_*_ageband_*MAIN.ster

05_hhClassif_an_multivariable_analysis_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/05_hhClassif_an_multivariable_analysis.do W2
outputs:
moderately_sensitive:
log: logs/05_hhClassif_an_multivariable_analysis_W2.log
data: output/hhClassif_multivariableAllEthnicities_*_ageband_*W2.ster

06_hhClassif_an_multivariable_analysis_eth5Interaction:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/06_hhClassif_an_multivariable_analysis_eth5Interaction.do MAIN
outputs:
moderately_sensitive:
log: logs/06_hhClassif_an_eth5Interaction_analysis_MAIN.log

06_hhClassif_an_multivariable_analysis_eth5Interaction_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/06_hhClassif_an_multivariable_analysis_eth5Interaction.do W2
outputs:
moderately_sensitive:
log: logs/06_hhClassif_an_eth5Interaction_analysis_W2.log

07_hhClassif_an_multivariable_analysis_perEth5Group:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/07_hhClassif_an_multivariable_analysis_perEth5Group.do MAIN
outputs:
moderately_sensitive:
log: logs/07_hhClassif_an_multivariable_analysis_perEth5Group_MAIN.log
data: output/hhClassif_multvariableAnalysisPerEth5_*_ageband_*_ethnicity_*MAIN.ster

07_hhClassif_an_multivariable_analysis_perEth5Group_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/07_hhClassif_an_multivariable_analysis_perEth5Group.do W2
outputs:
moderately_sensitive:
log: logs/07_hhClassif_an_multivariable_analysis_perEth5Group_W2.log
data: output/hhClassif_multvariableAnalysisPerEth5_*_ageband_*_ethnicity_*W2.ster

08_hhClassif_an_mv_analysis_perEth5Group_HR_table:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/08_hhClassif_an_mv_analysis_perEth5Group_HR_table.do MAIN
outputs:
moderately_sensitive:
log1: logs/08_hhClassif_tablecontent_HRtable_covidDeath_MAIN.log
log2: logs/08_hhClassif_tablecontent_HRtable_covidHosp_MAIN.log
log3: logs/08_hhClassif_tablecontent_HRtable_covidHospOrDeath_MAIN.log
log4: logs/08_hhClassif_tablecontent_HRtable_nonCovidDeath_MAIN.log
table1: output/hhClassif_tablecontents_HRtable_covidDeath_MAIN.txt
table2: output/hhClassif_tablecontents_HRtable_covidHosp_MAIN.txt
table3: output/hhClassif_tablecontents_HRtable_covidHospOrDeath_MAIN.txt
table4: output/hhClassif_tablecontents_HRtable_nonCovidDeath_MAIN.txt


08_hhClassif_an_mv_analysis_perEth5Group_HR_table_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/08_hhClassif_an_mv_analysis_perEth5Group_HR_table.do W2
outputs:
moderately_sensitive:
log1: logs/08_hhClassif_tablecontent_HRtable_covidDeath_W2.log
log2: logs/08_hhClassif_tablecontent_HRtable_covidHosp_W2.log
log3: logs/08_hhClassif_tablecontent_HRtable_covidHospOrDeath_W2.log
log4: logs/08_hhClassif_tablecontent_HRtable_nonCovidDeath_W2.log
table1: output/hhClassif_tablecontents_HRtable_covidDeath_W2.txt
table2: output/hhClassif_tablecontents_HRtable_covidHosp_W2.txt
table3: output/hhClassif_tablecontents_HRtable_covidHospOrDeath_W2.txt
table4: output/hhClassif_tablecontents_HRtable_nonCovidDeath_W2.txt

09_hhClassif_an_mv_analysis_perEth16Group_HR_table:
needs: [01_hhClassif_cr_analysis_dataset]
run: stata-mp:latest analysis/09_hhClassif_an_mv_analysis_perEth16Group_HR_table.do MAIN
outputs:
moderately_sensitive:
log1: logs/09_hhClassif_tablecontent_HRtable_eth16_covidDeath_MAIN.log
log2: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHosp_MAIN.log
log3: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHospOrDeath_MAIN.log
log4: logs/09_hhClassif_tablecontent_HRtable_eth16_nonCovidDeath_MAIN.log
table1: output/hhClassif_tablecontents_HRtable_eth16_covidDeath_MAIN.txt
table2: output/hhClassif_tablecontents_HRtable_eth16_covidHosp_MAIN.txt
table3: output/hhClassif_tablecontents_HRtable_eth16_covidHospOrDeath_MAIN.txt
table4: output/hhClassif_tablecontents_HRtable_eth16_nonCovidDeath_MAIN.txt


09_hhClassif_an_mv_analysis_perEth16Group_HR_table_W2:
needs: [01_hhClassif_cr_analysis_dataset_W2]
run: stata-mp:latest analysis/09_hhClassif_an_mv_analysis_perEth16Group_HR_table.do W2
outputs:
moderately_sensitive:
log1: logs/09_hhClassif_tablecontent_HRtable_eth16_covidDeath_W2.log
log2: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHosp_W2.log
log3: logs/09_hhClassif_tablecontent_HRtable_eth16_covidHospOrDeath_W2.log
log4: logs/09_hhClassif_tablecontent_HRtable_eth16_nonCovidDeath_W2.log
table1: output/hhClassif_tablecontents_HRtable_eth16_covidDeath_W2.txt
table2: output/hhClassif_tablecontents_HRtable_eth16_covidHosp_W2.txt
table3: output/hhClassif_tablecontents_HRtable_eth16_covidHospOrDeath_W2.txt
table4: output/hhClassif_tablecontents_HRtable_eth16_nonCovidDeath_W2.txt










Jobs

ID Status Action
du5mf7m2q5ilecdn succeeded 06_hhClassif_an_multivariable_analysis_eth5Interaction_W2 View
v5hsid2ezuaeh5x6 succeeded 08_hhClassif_an_mv_analysis_perEth5Group_HR_table_W2 View