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Job request: 1061

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
learning-disabilities-full
ID:
epxacw6zg277zt52

This page shows the technical details of what happened when the authorised researcher Elizabeth (Fizz) Williamson requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_cohort1
    Status:
    Status: Succeeded
    Job identifier:
    xt7urzgv3baqljfd
  • Action:
    generate_cohort2
    Status:
    Status: Succeeded
    Job identifier:
    jkkiu5ziqfphzhe4
  • Action:
    clean
    Status:
    Status: Succeeded
    Job identifier:
    23p7x24azi654kes
  • Action:
    create_analysis
    Status:
    Status: Succeeded
    Job identifier:
    h7lwcsno3saq23mt
  • Action:
    describe_cohort
    Status:
    Status: Succeeded
    Job identifier:
    35ihzioie2eewefw
  • Action:
    tabulate_cohort
    Status:
    Status: Succeeded
    Job identifier:
    hx4cqh56i6rzu35c
  • Action:
    cox_lda1
    Status:
    Status: Succeeded
    Job identifier:
    75rnnzjdqmojx73x
  • Action:
    cox_lda2
    Status:
    Status: Succeeded
    Job identifier:
    y2zfhxdh42iduoqd
  • Action:
    cox_lda3
    Status:
    Status: Succeeded
    Job identifier:
    4dnqle33xtnzoaca
  • Action:
    cox_lda4
    Status:
    Status: Succeeded
    Job identifier:
    tmvyg6btfkvkyxxg
  • Action:
    cox_lda5
    Status:
    Status: Succeeded
    Job identifier:
    wpegjbfmkct7gamg
  • Action:
    cox_lda6
    Status:
    Status: Succeeded
    Job identifier:
    u2nrxla7n4zepw6s
  • Action:
    cox_lda7
    Status:
    Status: Succeeded
    Job identifier:
    pnk75js5nxn5kdfx
  • Action:
    cox_lda8
    Status:
    Status: Succeeded
    Job identifier:
    t7jy7gggyc7gxtf7
  • Action:
    cox_lda9
    Status:
    Status: Succeeded
    Job identifier:
    uoxqv3yuugkbq652
  • Action:
    cox_lda10
    Status:
    Status: Succeeded
    Job identifier:
    rkj276d7j6l3tkfd
  • Action:
    cox_lda11
    Status:
    Status: Succeeded
    Job identifier:
    toahhtsxk66stbj7
  • Action:
    cox_lda12
    Status:
    Status: Succeeded
    Job identifier:
    6myw2x6h5z7xo6kx
  • Action:
    cox_ldd1
    Status:
    Status: Succeeded
    Job identifier:
    a2lqyzo655fjzyyv
  • Action:
    cox_ldd2
    Status:
    Status: Succeeded
    Job identifier:
    fo4cq2eonhjlk5a6
  • Action:
    cox_ldd3
    Status:
    Status: Succeeded
    Job identifier:
    siius2mnsxx55pti
  • Action:
    cox_ldd4
    Status:
    Status: Succeeded
    Job identifier:
    riqlotuy26f7wn2o
  • Action:
    cox_ldd5
    Status:
    Status: Succeeded
    Job identifier:
    64w6rmqnathm4l3e
  • Action:
    cox_ldd6
    Status:
    Status: Succeeded
    Job identifier:
    pkdqj7pb6g3rdsdo
  • Action:
    cox_ldd7
    Status:
    Status: Succeeded
    Job identifier:
    i7boe3f37bumu7ck
  • Action:
    cox_ldd8
    Status:
    Status: Succeeded
    Job identifier:
    xk6ozhrp6kse6w77
  • Action:
    cox_ldd9
    Status:
    Status: Succeeded
    Job identifier:
    nqfv6qlxaoaaiogb
  • Action:
    cox_ldd10
    Status:
    Status: Succeeded
    Job identifier:
    iipqp5swwkycdc3j
  • Action:
    cox_ldd11
    Status:
    Status: Succeeded
    Job identifier:
    livnlzytvrlzvyrj
  • Action:
    cox_ldd12
    Status:
    Status: Succeeded
    Job identifier:
    njtjzmwf5upeb3q3
  • Action:
    cox_regression_child
    Status:
    Status: Succeeded
    Job identifier:
    j5qed5svvdprjbr4
  • Action:
    cox_ldinta1
    Status:
    Status: Failed
    Job identifier:
    la2obaf72unaoe2i
    Error:
    No outputs found matching patterns: - output/ldcox_inter_wave1_covidadmission_ldr.out
  • Action:
    cox_ldinta2
    Status:
    Status: Succeeded
    Job identifier:
    xpjks2yoxghhhnog
  • Action:
    cox_ldinta3
    Status:
    Status: Succeeded
    Job identifier:
    vbmqy5s2mnwmeasv
  • Action:
    cox_ldinta4
    Status:
    Status: Succeeded
    Job identifier:
    5r6jqcvbsflrophx
  • Action:
    cox_ldinta5
    Status:
    Status: Succeeded
    Job identifier:
    5ddjhikbrzcf2zlv
  • Action:
    cox_ldinta6
    Status:
    Status: Failed
    Job identifier:
    r2i5dyt2qtekowkr
    Error:
    No outputs found matching patterns: - output/ldcox_inter_wave2_covidadmission_ldr_carecat.out
  • Action:
    cox_ldinta7
    Status:
    Status: Succeeded
    Job identifier:
    vy4em4g2yvaj2lss
  • Action:
    cox_ldinta8
    Status:
    Status: Succeeded
    Job identifier:
    pjs6we52igraofdz
  • Action:
    cox_ldinta9
    Status:
    Status: Succeeded
    Job identifier:
    5ddlamcnetzy77le
  • Action:
    cox_ldinta10
    Status:
    Status: Succeeded
    Job identifier:
    vgrlseqkxsyozazl
  • Action:
    cox_ldinta11
    Status:
    Status: Succeeded
    Job identifier:
    hgytwxds55oaldkg
  • Action:
    cox_ldinta12
    Status:
    Status: Succeeded
    Job identifier:
    zl4qu6gkt4witspt
  • Action:
    cox_ldintd1
    Status:
    Status: Succeeded
    Job identifier:
    37camsezanzreu4l
  • Action:
    cox_ldintd2
    Status:
    Status: Succeeded
    Job identifier:
    du4hlv5ffs37n5is
  • Action:
    cox_ldintd3
    Status:
    Status: Succeeded
    Job identifier:
    3og6u326zh63ppuu
  • Action:
    cox_ldintd4
    Status:
    Status: Failed
    Job identifier:
    zsbx5hmkqyaq5mpi
    Error:
    No outputs found matching patterns: - output/ldcox_inter_wave2_coviddeath_ldr_cat.out
  • Action:
    cox_ldintd5
    Status:
    Status: Failed
    Job identifier:
    sde2aifdefrzj5o6
    Error:
    No outputs found matching patterns: - output/ldcox_inter_wave1_coviddeath_ldr_carecat.out
  • Action:
    cox_ldintd6
    Status:
    Status: Failed
    Job identifier:
    2n4t2m2sk6tnytrw
    Error:
    No outputs found matching patterns: - output/ldcox_inter_wave2_coviddeath_ldr_carecat.out
  • Action:
    cox_ldintd7
    Status:
    Status: Succeeded
    Job identifier:
    rta6ubqicrtvssxf
  • Action:
    cox_ldintd8
    Status:
    Status: Succeeded
    Job identifier:
    tlv5j7xxfceinnef
  • Action:
    cox_ldintd9
    Status:
    Status: Succeeded
    Job identifier:
    u2bt5eczdzsvfwus
  • Action:
    cox_ldintd10
    Status:
    Status: Succeeded
    Job identifier:
    eet4mbn5zpntonmx
  • Action:
    cox_ldintd11
    Status:
    Status: Succeeded
    Job identifier:
    5nl3ve5qaq2m3vlv
  • Action:
    cox_ldintd12
    Status:
    Status: Succeeded
    Job identifier:
    l64lkgrh2lonefcf
  • Action:
    cox_ldresta1
    Status:
    Status: Succeeded
    Job identifier:
    iy6wno2pl7avt66j
  • Action:
    cox_ldresta2
    Status:
    Status: Succeeded
    Job identifier:
    6amtzwxgdesix4la
  • Action:
    cox_ldresta3
    Status:
    Status: Succeeded
    Job identifier:
    v5t445q4waejschm
  • Action:
    cox_ldresta4
    Status:
    Status: Succeeded
    Job identifier:
    o4inoisimtg6cvgp
  • Action:
    cox_ldresta5
    Status:
    Status: Succeeded
    Job identifier:
    3d5mf4gsqcziunnv
  • Action:
    cox_ldresta6
    Status:
    Status: Succeeded
    Job identifier:
    dj3voort2ytqj6ug
  • Action:
    cox_ldresta7
    Status:
    Status: Failed
    Job identifier:
    z2q3xiyfxnz7jrfo
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    cox_ldresta8
    Status:
    Status: Failed
    Job identifier:
    gem52nrqlruzndoz
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    cox_ldresta9
    Status:
    Status: Failed
    Job identifier:
    f6jxfxgleq6ern4a
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    cox_ldresta10
    Status:
    Status: Failed
    Job identifier:
    6qdjm4vgmok2uwtx
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    cox_ldresta11
    Status:
    Status: Failed
    Job identifier:
    4o6izvslgjjfnzce
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    cox_ldresta12
    Status:
    Status: Failed
    Job identifier:
    6opggxfa2eortcpp
    Error:
    nonzero_exit: Job exited with an error code
  • Action:
    cox_ldnoncovid1
    Status:
    Status: Succeeded
    Job identifier:
    vypbxtj7vnpl3bcn
  • Action:
    cox_ldnoncovid2
    Status:
    Status: Succeeded
    Job identifier:
    vjgfiqcd5mv4zlqu
  • Action:
    cox_ldnoncovid3
    Status:
    Status: Succeeded
    Job identifier:
    2jkogl3kketn37eb
  • Action:
    cox_ldnoncovid4
    Status:
    Status: Succeeded
    Job identifier:
    nvgkryrqf73za462
  • Action:
    cox_ldnoncovid5
    Status:
    Status: Succeeded
    Job identifier:
    a3ux3birtjgogwpq
  • Action:
    cox_ldnoncovid6
    Status:
    Status: Succeeded
    Job identifier:
    qdhesogcrrrj7uer
  • Action:
    cox_ldnoncovid7
    Status:
    Status: Succeeded
    Job identifier:
    5qcae3tlilwjx3q2
  • Action:
    cox_ldnoncovid8
    Status:
    Status: Succeeded
    Job identifier:
    ujlaa5d3fltp44x7
  • Action:
    cox_ldnoncovid9
    Status:
    Status: Succeeded
    Job identifier:
    jwdcaf5pmjuzqevp
  • Action:
    cox_ldnoncovid10
    Status:
    Status: Succeeded
    Job identifier:
    ck55gucgr3535nms
  • Action:
    cox_ldnoncovid11
    Status:
    Status: Succeeded
    Job identifier:
    74g7b6ri7nupwlhd
  • Action:
    cox_ldnoncovid12
    Status:
    Status: Succeeded
    Job identifier:
    ni3yv7jlksof4xu3

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 521:07:39

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Requested by
Elizabeth (Fizz) Williamson
Branch
master
Force run dependencies
No
Git commit hash
6116197
Requested actions
  • generate_cohort1
  • generate_cohort2
  • clean
  • create_analysis
  • describe_cohort
  • tabulate_cohort
  • cox_lda1
  • cox_lda2
  • cox_lda3
  • cox_lda4
  • cox_lda5
  • cox_lda6
  • cox_lda7
  • cox_lda8
  • cox_lda9
  • cox_lda10
  • cox_lda11
  • cox_lda12
  • cox_ldd1
  • cox_ldd2
  • cox_ldd3
  • cox_ldd4
  • cox_ldd5
  • cox_ldd6
  • cox_ldd7
  • cox_ldd8
  • cox_ldd9
  • cox_ldd10
  • cox_ldd11
  • cox_ldd12
  • cox_regression_child
  • cox_ldinta1
  • cox_ldinta2
  • cox_ldinta3
  • cox_ldinta4
  • cox_ldinta5
  • cox_ldinta6
  • cox_ldinta7
  • cox_ldinta8
  • cox_ldinta9
  • cox_ldinta10
  • cox_ldinta11
  • cox_ldinta12
  • cox_ldintd1
  • cox_ldintd2
  • cox_ldintd3
  • cox_ldintd4
  • cox_ldintd5
  • cox_ldintd6
  • cox_ldintd7
  • cox_ldintd8
  • cox_ldintd9
  • cox_ldintd10
  • cox_ldintd11
  • cox_ldintd12
  • cox_ldresta1
  • cox_ldresta2
  • cox_ldresta3
  • cox_ldresta4
  • cox_ldresta5
  • cox_ldresta6
  • cox_ldresta7
  • cox_ldresta8
  • cox_ldresta9
  • cox_ldresta10
  • cox_ldresta11
  • cox_ldresta12
  • cox_ldnoncovid1
  • cox_ldnoncovid2
  • cox_ldnoncovid3
  • cox_ldnoncovid4
  • cox_ldnoncovid5
  • cox_ldnoncovid6
  • cox_ldnoncovid7
  • cox_ldnoncovid8
  • cox_ldnoncovid9
  • cox_ldnoncovid10
  • cox_ldnoncovid11
  • cox_ldnoncovid12

Code comparison

Compare the code used in this job request