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Job request: 1778

Organisation:
Bennett Institute
Workspace:
long-covid-ncs
ID:
lhx4k3fduqa7otmi
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Alex Walker requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 2000

actions:

  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_cohort
    outputs:
      highly_sensitive:
        cohort: output/input_cohort.csv

  count_by_strata:
    run: python:latest python analysis/all_time_counts.py
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        table: output/counts_table.csv

  logistic_models:
    run: stata-mp:latest analysis/model.do
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        table: output/model_summary.csv
        log: logs/models.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:01:40

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
long-covid-ncs
Requested by
Alex Walker
Branch
NCS-historical-health
Force run dependencies
Yes
Git commit hash
525e783
Requested actions
  • run_all

Code comparison

Compare the code used in this job request