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Job request: 1779

Organisation:
Bennett Institute
Workspace:
long-covid-ncs
ID:
onaexpvhsjypsla2
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Alex Walker requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 2000

actions:

  generate_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_cohort
    outputs:
      highly_sensitive:
        cohort: output/input_cohort.csv

  count_by_strata:
    run: python:latest python analysis/all_time_counts.py
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        table: output/counts_table.csv

  logistic_models:
    run: stata-mp:latest analysis/model.do
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        table: output/model_summary.csv
        table_dta: output/model_summary.dta
        log: logs/models.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:02:16

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
long-covid-ncs
Requested by
Alex Walker
Branch
NCS-historical-health
Force run dependencies
No
Git commit hash
00dfc44
Requested actions
  • logistic_models

Code comparison

Compare the code used in this Job Request