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Job request: 11907

Organisation:
Bennett Institute
Workspace:
long-covid-sick-notes
ID:
wzk4vum7iyqktpmw
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Alex Walker requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population_covid_2020
    Status:
    Succeeded
    Job identifier:
    ro5j3tshtyfonoyr
  • Action:
    generate_study_population_covid_2021
    Status:
    Succeeded
    Job identifier:
    e77irew25jmwdkdd
  • Action:
    generate_study_population_general_match_vars_2020
    Status:
    Succeeded
    Job identifier:
    n5wge6ueeigreryi
  • Action:
    generate_study_population_general_match_vars_2019
    Status:
    Succeeded
    Job identifier:
    avhdrc3iomn3zq3w
  • Action:
    generate_study_population_pneumonia_2019
    Status:
    Succeeded
    Job identifier:
    scgoi5f5e6y3afbr
  • Action:
    generate_study_population_general_match_vars_2021
    Status:
    Succeeded
    Job identifier:
    p5k5fe6si3jnuyjj
  • Action:
    reconcile_sick_note_spells_covid_2020
    Status:
    Succeeded
    Job identifier:
    cftsbgec5zfr54eq
  • Action:
    matching_2020
    Status:
    Succeeded
    Job identifier:
    22irvuxidm7hmtae
  • Action:
    matching_2019
    Status:
    Succeeded
    Job identifier:
    rulmhnm6rggtcw2t
  • Action:
    covid_2020_rates_cohort
    Status:
    Succeeded
    Job identifier:
    gboqq5if47yu42m3
  • Action:
    covid_2020_rates
    Status:
    Succeeded
    Job identifier:
    jboadeam2pavstkd
  • Action:
    generate_study_population_matched_2019
    Status:
    Succeeded
    Job identifier:
    zoicafkmk2kqub6u
  • Action:
    generate_study_population_matched_2020
    Status:
    Succeeded
    Job identifier:
    5kdwk5vueeye4obk
  • Action:
    reconcile_sick_note_spells_general_2020
    Status:
    Succeeded
    Job identifier:
    joaqxq5a5746utl7
  • Action:
    reconcile_sick_note_spells_general_2019
    Status:
    Succeeded
    Job identifier:
    ndzcuueym3d4vx6y
  • Action:
    general_2020_rates_cohort
    Status:
    Failed
    Job identifier:
    hpjnkdwyccreugoq
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    general_2019_rates_cohort
    Status:
    Failed
    Job identifier:
    zceyjgtrsjao2kuf
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    matching_2021
    Status:
    Succeeded
    Job identifier:
    tngwizhe3irynd4k
  • Action:
    reconcile_sick_note_spells_covid_2021
    Status:
    Succeeded
    Job identifier:
    lnlgjb4jzqmyqao3
  • Action:
    covid_2021_rates_cohort
    Status:
    Succeeded
    Job identifier:
    7lxwv2tqrmpjcfu2
  • Action:
    covid_2021_rates
    Status:
    Succeeded
    Job identifier:
    xk7qmztugztln7up
  • Action:
    generate_study_population_matched_2021
    Status:
    Succeeded
    Job identifier:
    vbdusntggykjol2f
  • Action:
    reconcile_sick_note_spells_general_2021
    Status:
    Succeeded
    Job identifier:
    iaqyqjmouxhxmrzd
  • Action:
    general_2021_rates_cohort
    Status:
    Succeeded
    Job identifier:
    bp3x43jw7f3ybsbj
  • Action:
    general_2021_rates
    Status:
    Succeeded
    Job identifier:
    6kcvo6yshhsdadwa
  • Action:
    reconcile_sick_note_spells_pneumonia_2019
    Status:
    Succeeded
    Job identifier:
    3iud3xmvxls7jcqk
  • Action:
    pneumonia_2019_rates_cohort
    Status:
    Succeeded
    Job identifier:
    de2qqtutwb4we2bq
  • Action:
    pneumonia_2019_rates
    Status:
    Succeeded
    Job identifier:
    c2ujgmpcgwa4vu56
  • Action:
    general_2020_rates
    Status:
    Failed
    Job identifier:
    kdjjdwroa2gwsq6h
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    describe_duration_diagnoses
    Status:
    Failed
    Job identifier:
    3hyi5g5ibq4gzgfq
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    general_2019_rates
    Status:
    Failed
    Job identifier:
    if6pv36xmbtegb6c
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    append_cohorts
    Status:
    Failed
    Job identifier:
    dqjebmnwhvvvu7as
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 93:59:09

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
long-covid-sick-notes
Requested by
Alex Walker
Branch
master
Force run dependencies
No
Git commit hash
0eb4465
Requested actions
  • generate_study_population_covid_2020
  • generate_study_population_covid_2021
  • generate_study_population_general_match_vars_2019
  • generate_study_population_general_match_vars_2020
  • generate_study_population_general_match_vars_2021
  • generate_study_population_pneumonia_2019
  • matching_2019
  • matching_2020
  • matching_2021
  • generate_study_population_matched_2019
  • generate_study_population_matched_2020
  • generate_study_population_matched_2021
  • reconcile_sick_note_spells_covid_2020
  • reconcile_sick_note_spells_covid_2021
  • reconcile_sick_note_spells_general_2019
  • reconcile_sick_note_spells_general_2020
  • reconcile_sick_note_spells_general_2021
  • reconcile_sick_note_spells_pneumonia_2019
  • covid_2020_rates_cohort
  • covid_2021_rates_cohort
  • general_2019_rates_cohort
  • general_2020_rates_cohort
  • general_2021_rates_cohort
  • pneumonia_2019_rates_cohort
  • covid_2020_rates
  • covid_2021_rates
  • general_2019_rates
  • general_2020_rates
  • general_2021_rates
  • pneumonia_2019_rates
  • append_cohorts
  • describe_duration_diagnoses

Code comparison

Compare the code used in this job request