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Job request: 14760

Organisation:
Bennett Institute
Workspace:
long-covid-sick-notes
ID:
fcomqnjf4ol5fidl

This page shows the technical details of what happened when the authorised researcher Andrea Schaffer requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    pneumonia_2019_rates_cohort
    Status:
    Status: Failed
    Job identifier:
    hkhqvvgivn742i7e
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/tabfig/length_of_st*.svg
  • Action:
    covid_2021_rates_cohort
    Status:
    Status: Failed
    Job identifier:
    n7go6emct5vidgcx
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    covid_2020_rates_cohort
    Status:
    Status: Failed
    Job identifier:
    hlnowovvbuk6le6f
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    covid_2021_rates
    Status:
    Status: Failed
    Job identifier:
    6k63dnldlgtkr7i3
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_models
    Status:
    Status: Failed
    Job identifier:
    uqkgwe45zskmvbur
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    pneumonia_2019_rates
    Status:
    Status: Failed
    Job identifier:
    7bkb73sfl2b3kec7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    covid_2020_rates
    Status:
    Status: Failed
    Job identifier:
    22gwqg4r44673cwf
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    append_cohorts
    Status:
    Status: Failed
    Job identifier:
    q2nsadumgqhsjnb6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_models_split_2021_pneumo
    Status:
    Status: Failed
    Job identifier:
    jfxj4ot2mi4xw5hk
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_models_split_2020_pneumo
    Status:
    Status: Failed
    Job identifier:
    nouibubykcqj5mb7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    covid_hosp_2020_rates
    Status:
    Status: Failed
    Job identifier:
    5asz5z7lrmsn7xa6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    covid_hosp_2021_rates
    Status:
    Status: Failed
    Job identifier:
    t2p5kmdxs5rcnbjw
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:05:52

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Requested by
Andrea Schaffer
Branch
master
Force run dependencies
No
Git commit hash
c5432ca
Requested actions
  • covid_2020_rates_cohort
  • covid_2021_rates_cohort
  • pneumonia_2019_rates_cohort
  • covid_2020_rates
  • covid_2021_rates
  • pneumonia_2019_rates
  • covid_hosp_2020_rates
  • covid_hosp_2021_rates
  • append_cohorts
  • cox_models
  • cox_models_split_2020_pneumo
  • cox_models_split_2021_pneumo

Code comparison

Compare the code used in this job request