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Job request: 14764

Organisation:
Bennett Institute
Workspace:
long-covid-sick-notes
ID:
iu23euaq5g2djilu

This page shows the technical details of what happened when the authorised researcher Andrea Schaffer requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    covid_2021_rates_cohort
    Status:
    Status: Failed
    Job identifier:
    qksgx32yze3wbsqq
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    covid_2020_rates_cohort
    Status:
    Status: Failed
    Job identifier:
    m35hqldeaqwzat5w
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    pneumonia_2019_rates_cohort
    Status:
    Status: Failed
    Job identifier:
    665xilq265mdlqqg
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/tabfig/length_of_st*.svg
  • Action:
    cox_models_split_2020_pneumo
    Status:
    Status: Failed
    Job identifier:
    wmq4m76t6lxwl3es
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_models_split_2021_pneumo
    Status:
    Status: Failed
    Job identifier:
    76iorjqelj6uau3u
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    pneumonia_2019_rates
    Status:
    Status: Failed
    Job identifier:
    n3rh3bto4pig6bmv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    covid_2020_rates
    Status:
    Status: Failed
    Job identifier:
    gy634roexfeusvo7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    append_cohorts
    Status:
    Status: Failed
    Job identifier:
    koigsxihqji3nxex
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    covid_hosp_2020_rates
    Status:
    Status: Failed
    Job identifier:
    z232tgycyb53rrik
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    covid_2021_rates
    Status:
    Status: Failed
    Job identifier:
    qvzeffezkbwlbtff
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    covid_hosp_2021_rates
    Status:
    Status: Failed
    Job identifier:
    vy4drs2qs4nml4ps
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_models
    Status:
    Status: Failed
    Job identifier:
    mzhmc4pmdnsbzs2z
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:05:49

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Requested by
Andrea Schaffer
Branch
master
Force run dependencies
No
Git commit hash
c5432ca
Requested actions
  • covid_2020_rates_cohort
  • covid_2021_rates_cohort
  • pneumonia_2019_rates_cohort
  • covid_2020_rates
  • covid_2021_rates
  • pneumonia_2019_rates
  • covid_hosp_2020_rates
  • covid_hosp_2021_rates
  • append_cohorts
  • cox_models
  • cox_models_split_2020_pneumo
  • cox_models_split_2021_pneumo

Code comparison

Compare the code used in this job request