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Job request: 15286

Organisation:
Bennett Institute
Workspace:
long-covid-sick-notes
ID:
ufxn3xo4coo2ieo3
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Andrea Schaffer requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population_general_match_vars_2019
    Status:
    Succeeded
    Job identifier:
    ehbej5tbblzhzs56
  • Action:
    general_2021_rates_cohort
    Status:
    Succeeded
    Job identifier:
    ewnqlewcb22rwtwh
  • Action:
    pneumonia_2019_rates_cohort
    Status:
    Succeeded
    Job identifier:
    c2ma23j77jkp4ite
  • Action:
    generate_study_population_pneumonia_2019
    Status:
    Succeeded
    Job identifier:
    4lm2glhpcipbwpjy
  • Action:
    generate_study_population_general_match_vars_2021
    Status:
    Succeeded
    Job identifier:
    2v672ff6isgcazn3
  • Action:
    covid_2020_rates_cohort
    Status:
    Succeeded
    Job identifier:
    37namddpeo27nqxf
  • Action:
    general_2020_rates_cohort
    Status:
    Succeeded
    Job identifier:
    l72lnvarfiqqpl5f
  • Action:
    generate_study_population_covid_2020
    Status:
    Succeeded
    Job identifier:
    reksb2f7hxfagw27
  • Action:
    covid_2021_rates_cohort
    Status:
    Succeeded
    Job identifier:
    7nxbs6xsm5z5l6yd
  • Action:
    general_2019_rates_cohort
    Status:
    Succeeded
    Job identifier:
    gp7vriqeqonlsflz
  • Action:
    generate_study_population_general_match_vars_2020
    Status:
    Succeeded
    Job identifier:
    u7ugxr6vmcdrime7
  • Action:
    generate_study_population_covid_2021
    Status:
    Failed
    Job identifier:
    kde4t2v43o2gufb3
    Error:
    nonzero_exit: Job exited with an error: A transient database error occurred, your job may run if you try it again, if it keeps failing then contact tech support
  • Action:
    pneumonia_2019_rates
    Status:
    Succeeded
    Job identifier:
    duwrzldnsts7mock
  • Action:
    covid_2020_rates
    Status:
    Succeeded
    Job identifier:
    egrcvcvx7dxspb2w
  • Action:
    covid_hosp_2020_rates
    Status:
    Succeeded
    Job identifier:
    ba6okrieul3zmb62
  • Action:
    covid_2021_rates
    Status:
    Succeeded
    Job identifier:
    hxxvrlghgsjtizhq
  • Action:
    covid_hosp_2021_rates
    Status:
    Succeeded
    Job identifier:
    2sk6puhgrwq2miix
  • Action:
    general_2021_rates
    Status:
    Failed
    Job identifier:
    pauod4fly5ucvzdh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    check_end_date
    Status:
    Succeeded
    Job identifier:
    sxog4k3c4eouwm64
  • Action:
    append_cohorts
    Status:
    Succeeded
    Job identifier:
    mwzb6xue2thuyltn
  • Action:
    general_2019_rates
    Status:
    Failed
    Job identifier:
    eabiiqibjp74gt6i
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    general_2020_rates
    Status:
    Failed
    Job identifier:
    65xrmyrzamq2zbbc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    matching_2020
    Status:
    Succeeded
    Job identifier:
    ak6ibgqnc7dm2epk
  • Action:
    matching_2019
    Status:
    Succeeded
    Job identifier:
    ghixcjqkciug4gcq
  • Action:
    generate_study_population_matched_2019
    Status:
    Succeeded
    Job identifier:
    vvqjcyq5pgurywz3
  • Action:
    generate_study_population_matched_2020
    Status:
    Succeeded
    Job identifier:
    h4o25je7tkpapyuc
  • Action:
    generate_study_population_matched_2021
    Status:
    Failed
    Job identifier:
    tjpfxbwaione3dxh
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    matching_2021
    Status:
    Failed
    Job identifier:
    pyurlwdxgwhonkri
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 105:44:59

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
long-covid-sick-notes
Requested by
Andrea Schaffer
Branch
master
Force run dependencies
No
Git commit hash
f98b896
Requested actions
  • generate_study_population_covid_2020
  • generate_study_population_covid_2021
  • generate_study_population_general_match_vars_2019
  • generate_study_population_general_match_vars_2020
  • generate_study_population_general_match_vars_2021
  • generate_study_population_pneumonia_2019
  • matching_2019
  • matching_2020
  • matching_2021
  • generate_study_population_matched_2019
  • generate_study_population_matched_2020
  • generate_study_population_matched_2021
  • covid_2020_rates_cohort
  • covid_2021_rates_cohort
  • general_2019_rates_cohort
  • general_2020_rates_cohort
  • general_2021_rates_cohort
  • pneumonia_2019_rates_cohort
  • covid_2020_rates
  • covid_2021_rates
  • general_2019_rates
  • general_2020_rates
  • general_2021_rates
  • pneumonia_2019_rates
  • covid_hosp_2020_rates
  • covid_hosp_2021_rates
  • append_cohorts
  • check_end_date

Code comparison

Compare the code used in this job request