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Job request: 17480

Organisation:
Bennett Institute
Workspace:
long-covid-sick-notes
ID:
262ksjmoiol5jyrh
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Andrea Schaffer requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    cox_models_split_gen_2021_region
    Status:
    Failed
    Job identifier:
    wxjy2afeiqjgfuvy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2021_pneumo_sex
    Status:
    Failed
    Job identifier:
    eezt75dq37ptfmmw
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/cohorts/cox_models_split_2021_pneumonia_male.txt - output/tabfig/cox_model_split_summary_2021_pneumonia_male.csv
  • Action:
    cox_models_split_2020_pneumo_male
    Status:
    Failed
    Job identifier:
    rtozdmjq3jepgcfz
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/cohorts/cox_models_split_2020_pneumonia_male.txt - output/tabfig/cox_model_split_summary_2020_pneumonia_male.csv
  • Action:
    cox_models_age
    Status:
    Failed
    Job identifier:
    hh2ddthlrwdknm3v
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/cohorts/cox_models_age_group.txt
  • Action:
    cox_models_imd
    Status:
    Failed
    Job identifier:
    gbcmtr6y52p3aavu
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/cohorts/cox_models_imd.txt
  • Action:
    cox_models_region
    Status:
    Failed
    Job identifier:
    u2yivffzwu2h3p7l
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/cohorts/cox_models_region_9.txt
  • Action:
    cox_models_split_gen_2021_ethnicity
    Status:
    Failed
    Job identifier:
    nu4lpyh4oyhjijgt
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_gen_2020_age
    Status:
    Failed
    Job identifier:
    tfdcxpo3ibwdu467
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2020_gen_2019_sex
    Status:
    Failed
    Job identifier:
    4hqy6in3e36gsz3k
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2021_gen_2019_ethnicity
    Status:
    Failed
    Job identifier:
    k75yrie6ynjqt6pq
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2021_gen_2019_imd
    Status:
    Failed
    Job identifier:
    35hdd6knpo2srte2
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_gen_2020_sex
    Status:
    Failed
    Job identifier:
    33xzuu7exrwawljx
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2021_pneumo_imd
    Status:
    Failed
    Job identifier:
    cyqdz5ix4pvd4wsx
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/cohorts/cox_models_split_2021_pneumonia_imd.txt - output/tabfig/cox_model_split_summary_2021_pneumonia_imd.csv
  • Action:
    cox_models_split_2021_gen_2019_age
    Status:
    Failed
    Job identifier:
    tstlquysx53hn27x
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_gen_2020_ethnicity
    Status:
    Failed
    Job identifier:
    jym5nzq6ua6jjmlz
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2020_gen_2019_ethnicity
    Status:
    Failed
    Job identifier:
    hl5vmnynvtoyxxnw
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_sex
    Status:
    Failed
    Job identifier:
    epvd2kvcc4w5arnj
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/cohorts/cox_models_male.txt
  • Action:
    cox_models_split_2021_gen_2019_sex
    Status:
    Failed
    Job identifier:
    vr6esb2kctcxasb3
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2021_pneumo_region
    Status:
    Failed
    Job identifier:
    wyceju5oy54dkoge
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_ethnicity
    Status:
    Failed
    Job identifier:
    mcijdkulfogg2om6
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/cohorts/cox_models_ethnicity.txt
  • Action:
    cox_models_split_gen_2021_age
    Status:
    Failed
    Job identifier:
    hvqbfzo33ubwcsw4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_gen_2020_imd
    Status:
    Failed
    Job identifier:
    akmm46i673l7ulhz
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2020_gen_2019_region
    Status:
    Failed
    Job identifier:
    ydtihae3t3vmhqpp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2021_pneumo_ethnicity
    Status:
    Failed
    Job identifier:
    kxokt7bpyh2fzzw7
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_gen_2021_imd
    Status:
    Failed
    Job identifier:
    xhwr5vgiebtm2bbk
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2021_gen_2019_region
    Status:
    Failed
    Job identifier:
    ddvu42hvakrl6hl6
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2020_pneumo_imd
    Status:
    Failed
    Job identifier:
    7atoae6u7httkvfp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2020_gen_2019_imd
    Status:
    Failed
    Job identifier:
    ybvbwsjadyrpw6qc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_gen_2020_region
    Status:
    Failed
    Job identifier:
    vp6puzjgztiunre7
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2020_pneumo_region
    Status:
    Failed
    Job identifier:
    txsxaaes3ezfghzk
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_gen_2021_sex
    Status:
    Failed
    Job identifier:
    jauilkmemyk4zo7l
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2020_pneumo_age
    Status:
    Failed
    Job identifier:
    nfychnzekm4agcda
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2020_pneumo_ethnicity
    Status:
    Failed
    Job identifier:
    pj2nmvv5otvqb33j
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2021_pneumo_age
    Status:
    Failed
    Job identifier:
    2wgwtbpi5lqbonok
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_split_2020_gen_2019_age
    Status:
    Failed
    Job identifier:
    zlpbvy2cxoleqmyl
    Error:
    cancelled_by_user: Cancelled by user

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 45:08:37

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
long-covid-sick-notes
Requested by
Andrea Schaffer
Branch
master
Force run dependencies
No
Git commit hash
229b19f
Requested actions
  • cox_models_age
  • cox_models_ethnicity
  • cox_models_imd
  • cox_models_region
  • cox_models_sex
  • cox_models_split_2020_pneumo_age
  • cox_models_split_2021_pneumo_age
  • cox_models_split_2020_gen_2019_age
  • cox_models_split_2021_gen_2019_age
  • cox_models_split_gen_2020_age
  • cox_models_split_gen_2021_age
  • cox_models_split_2020_pneumo_ethnicity
  • cox_models_split_2021_pneumo_ethnicity
  • cox_models_split_2020_gen_2019_ethnicity
  • cox_models_split_2021_gen_2019_ethnicity
  • cox_models_split_gen_2020_ethnicity
  • cox_models_split_gen_2021_ethnicity
  • cox_models_split_2020_pneumo_imd
  • cox_models_split_2021_pneumo_imd
  • cox_models_split_2020_gen_2019_imd
  • cox_models_split_2021_gen_2019_imd
  • cox_models_split_gen_2020_imd
  • cox_models_split_gen_2021_imd
  • cox_models_split_2020_pneumo_region
  • cox_models_split_2021_pneumo_region
  • cox_models_split_2020_gen_2019_region
  • cox_models_split_2021_gen_2019_region
  • cox_models_split_gen_2020_region
  • cox_models_split_gen_2021_region
  • cox_models_split_2020_pneumo_male
  • cox_models_split_2021_pneumo_sex
  • cox_models_split_2020_gen_2019_sex
  • cox_models_split_2021_gen_2019_sex
  • cox_models_split_gen_2020_sex
  • cox_models_split_gen_2021_sex

Code comparison

Compare the code used in this job request