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Job request: 23002

Organisation:
Bennett Institute
Workspace:
long-covid-sick-notes
ID:
mcc2m3tuclkvqdo2
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Rose Higgins requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population_covid_2020
    Status:
    Succeeded
    Job identifier:
    kks3qaozs5puqbgm
  • Action:
    generate_study_population_covid_2021
    Status:
    Failed
    Job identifier:
    lyy53au76na2xccz
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_covid_2022
    Status:
    Succeeded
    Job identifier:
    5asuhryk4eahxxxl
  • Action:
    generate_study_population_general_match_vars_2019
    Status:
    Succeeded
    Job identifier:
    6msq2zcgheana6og
  • Action:
    generate_study_population_general_match_vars_2020
    Status:
    Succeeded
    Job identifier:
    4ug37cxfj36i4fzz
  • Action:
    generate_study_population_general_match_vars_2021
    Status:
    Succeeded
    Job identifier:
    rx6bz2xxdv3bw73x
  • Action:
    generate_study_population_general_match_vars_2022
    Status:
    Succeeded
    Job identifier:
    6yaov33metei56g4
  • Action:
    generate_study_population_pneumonia_2019
    Status:
    Succeeded
    Job identifier:
    kuedu4qficetekxn
  • Action:
    generate_study_population_covid_2023
    Status:
    Failed
    Job identifier:
    cu7qn7x6ntceobt3
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_covid_2024
    Status:
    Failed
    Job identifier:
    pkxbic522eobdb25
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    matching_2019
    Status:
    Succeeded
    Job identifier:
    vtys3urtsglqlezs
  • Action:
    matching_2020
    Status:
    Succeeded
    Job identifier:
    ckvomsxcdn7ysajq
  • Action:
    reconcile_sick_note_spells_covid_2020
    Status:
    Succeeded
    Job identifier:
    xzi4r33f4btbkvgm
  • Action:
    covid_2020_rates_cohort
    Status:
    Succeeded
    Job identifier:
    rj6sd76c7t5utggw
  • Action:
    covid_2020_rates
    Status:
    Succeeded
    Job identifier:
    vzllul4byixmmnx5
  • Action:
    covid_hosp_2020_rates
    Status:
    Succeeded
    Job identifier:
    ekxdfvawnie2kajr
  • Action:
    generate_study_population_matched_2019
    Status:
    Succeeded
    Job identifier:
    z3ixbyukxo7ovjew
  • Action:
    generate_study_population_matched_2020
    Status:
    Succeeded
    Job identifier:
    ry42p24mtvk2o5by
  • Action:
    reconcile_sick_note_spells_pneumonia_2019
    Status:
    Succeeded
    Job identifier:
    3td6malwgmemvcqp
  • Action:
    pneumonia_2019_rates_cohort
    Status:
    Succeeded
    Job identifier:
    7rhg2i4fwthmalnz
  • Action:
    pneumonia_2019_rates
    Status:
    Succeeded
    Job identifier:
    yrjxc7qybj7kkoob
  • Action:
    generate_study_population_general_match_vars_2023
    Status:
    Succeeded
    Job identifier:
    tj35cybdgn4nggbm
  • Action:
    matching_2022
    Status:
    Succeeded
    Job identifier:
    lkkygg5ev3df4jim
  • Action:
    reconcile_sick_note_spells_covid_2022
    Status:
    Succeeded
    Job identifier:
    mk364fyxlsk2ctwo
  • Action:
    covid_2022_rates_cohort
    Status:
    Succeeded
    Job identifier:
    whtvsnyhuznrtw7p
  • Action:
    covid_2022_rates
    Status:
    Succeeded
    Job identifier:
    i74p6cz7urdfook2
  • Action:
    covid_hosp_2022_rates
    Status:
    Succeeded
    Job identifier:
    fbcvbj3ouiev5rmc
  • Action:
    generate_study_population_general_match_vars_2024
    Status:
    Failed
    Job identifier:
    awicgfwfrvqfnwfy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_matched_2022
    Status:
    Failed
    Job identifier:
    4zfxgmcham5eojxj
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    reconcile_sick_note_spells_general_2019
    Status:
    Succeeded
    Job identifier:
    pzkg4kuczbnudpxz
  • Action:
    general_2019_rates_cohort
    Status:
    Succeeded
    Job identifier:
    jsry6ushemq2i3u4
  • Action:
    general_2019_rates
    Status:
    Succeeded
    Job identifier:
    56xnj7ypjiac73z7
  • Action:
    reconcile_sick_note_spells_general_2020
    Status:
    Succeeded
    Job identifier:
    mimwi3w33x7is2d5
  • Action:
    general_2020_rates_cohort
    Status:
    Succeeded
    Job identifier:
    qjtrl6yif4regg2e
  • Action:
    general_2020_rates
    Status:
    Succeeded
    Job identifier:
    ph5syzvloo3yt45i
  • Action:
    cox_models_region
    Status:
    Failed
    Job identifier:
    sua27cewscugaazq
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_2021_gen_2019
    Status:
    Failed
    Job identifier:
    daruu5teil3omqik
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_2022_gen_2019
    Status:
    Failed
    Job identifier:
    wer3vk7qq4t3yjgz
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_gen_2020
    Status:
    Failed
    Job identifier:
    slckbp5qpff7oekn
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    append_cohorts
    Status:
    Failed
    Job identifier:
    4r32km2hzy7rgbz5
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    check_died
    Status:
    Failed
    Job identifier:
    w6wt5lgppuclnlns
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    covid_2021_rates_cohort
    Status:
    Failed
    Job identifier:
    tvgbqekonzceht3g
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    covid_hosp_2021_rates
    Status:
    Failed
    Job identifier:
    ggfuctdup4jp2qd4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_matched_2023
    Status:
    Failed
    Job identifier:
    wfe4m6eaghazrxw6
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models
    Status:
    Failed
    Job identifier:
    dbhw3o3m3u7azkxy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_2023_gen_2019
    Status:
    Failed
    Job identifier:
    yht656zqcr6xfzoi
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_2024_gen_2019
    Status:
    Failed
    Job identifier:
    uvextobhrrwpiuul
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_2023_pneumo
    Status:
    Failed
    Job identifier:
    y5dm4eka2zvxifxt
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    reconcile_sick_note_spells_covid_2023
    Status:
    Failed
    Job identifier:
    ed66siu7ng3rohks
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_sex
    Status:
    Failed
    Job identifier:
    juwbtrraddbulyuh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_2020_pneumo
    Status:
    Failed
    Job identifier:
    oc7x6slbxvdhhlhd
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_2024_pneumo
    Status:
    Failed
    Job identifier:
    strpgrrdy3ls3ooy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_matched_2024
    Status:
    Failed
    Job identifier:
    xbs5wv6b3dp4d5i4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    reconcile_sick_note_spells_covid_2024
    Status:
    Failed
    Job identifier:
    y4imbbydal32zfey
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    covid_2023_rates
    Status:
    Failed
    Job identifier:
    5ea3wg7qbscnfqsf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    covid_hosp_2024_rates
    Status:
    Failed
    Job identifier:
    fwx4pxklarinybns
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_2021_pneumo
    Status:
    Failed
    Job identifier:
    2ug23bdhdkvm2e7l
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    covid_2021_rates
    Status:
    Failed
    Job identifier:
    hwsfe3eso5g23bf7
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    covid_2024_rates
    Status:
    Failed
    Job identifier:
    krah3klp5ypvsjfm
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    general_2023_rates
    Status:
    Failed
    Job identifier:
    weatnlx3hotkr6xp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    general_2024_rates
    Status:
    Failed
    Job identifier:
    7sk3pppf5pnnikrn
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    covid_hosp_2023_rates
    Status:
    Failed
    Job identifier:
    2shuh46nj3jgwx4r
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    covid_2024_rates_cohort
    Status:
    Failed
    Job identifier:
    6ggrhqwx2uewe63h
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    general_2023_rates_cohort
    Status:
    Failed
    Job identifier:
    r6v5n2osdo72xv2b
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    covid_2023_rates_cohort
    Status:
    Failed
    Job identifier:
    wdfltaat3ikobcut
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    general_2024_rates_cohort
    Status:
    Failed
    Job identifier:
    mgul37ebgx2pw7qh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_matched_2021
    Status:
    Failed
    Job identifier:
    hjck4q3g53qv3tjc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    matching_2023
    Status:
    Failed
    Job identifier:
    mwrqnjti47ycpmgo
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    matching_2024
    Status:
    Failed
    Job identifier:
    2go2zcmpc6pafodv
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    check_dates
    Status:
    Failed
    Job identifier:
    zcqrcw3ujbsnepgh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_2022_pneumo
    Status:
    Failed
    Job identifier:
    e3wnomwxy5433pzx
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_gen_2024
    Status:
    Failed
    Job identifier:
    qyav7aqr6yrzur27
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    reconcile_sick_note_spells_general_2023
    Status:
    Failed
    Job identifier:
    qxjq3qqy5rrezjmm
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    reconcile_sick_note_spells_general_2024
    Status:
    Failed
    Job identifier:
    ctg2eea73rmluz76
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_gen_2023
    Status:
    Failed
    Job identifier:
    emxzyrmeawhk4u76
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_2020_gen_2019
    Status:
    Failed
    Job identifier:
    guprn2db3ps6uq4u
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    table1
    Status:
    Failed
    Job identifier:
    qyrpgkh2wzuci74j
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    table_covid
    Status:
    Failed
    Job identifier:
    76oyblsdru6p73vf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    general_2022_rates
    Status:
    Failed
    Job identifier:
    rbzvvoouj6gdqu6i
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    reconcile_sick_note_spells_general_2021
    Status:
    Failed
    Job identifier:
    te6yigtove4wea66
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    reconcile_sick_note_spells_general_2022
    Status:
    Failed
    Job identifier:
    5wrkbwwpajlifps2
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    general_2021_rates_cohort
    Status:
    Failed
    Job identifier:
    iq7ercddfuyhexng
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    reconcile_sick_note_spells_covid_2021
    Status:
    Failed
    Job identifier:
    hbuttzsgq74niqez
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    matching_2021
    Status:
    Failed
    Job identifier:
    z2xy5eecgkztbd3m
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    population
    Status:
    Failed
    Job identifier:
    w3lgpaa7b7n7lnfs
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    general_2021_rates
    Status:
    Failed
    Job identifier:
    pu6kzwmtmb7y56ao
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    general_2022_rates_cohort
    Status:
    Failed
    Job identifier:
    jmj6gvdeubqk4fpf
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_gen_2021
    Status:
    Failed
    Job identifier:
    sklixhmfyca4mdic
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_time_gen_2022
    Status:
    Failed
    Job identifier:
    kbmibjbjzixqvypp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_age
    Status:
    Failed
    Job identifier:
    bl3npivqsguup6t4
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_ethnicity
    Status:
    Failed
    Job identifier:
    xnrg3iijgrh3zmrs
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    cox_models_imd
    Status:
    Failed
    Job identifier:
    j52nfptrcredp3yz
    Error:
    cancelled_by_user: Cancelled by user

Pipeline

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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 396:24:39

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
long-covid-sick-notes
Requested by
Rose Higgins
Branch
master
Force run dependencies
Yes
Git commit hash
ac24c59
Requested actions
  • run_all

Code comparison

Compare the code used in this job request