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Job request: 10738

Organisation:
University of Bristol
Workspace:
long-covid-risk-factors
ID:
5bnnxuse55xuxazu
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Yinghui Wei requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population_infected
    Status:
    Succeeded
    Job identifier:
    6pd3jvger5bf7o2m
  • Action:
    generate_study_population_vaccinated
    Status:
    Succeeded
    Job identifier:
    sy5kbkff7c2krczz
  • Action:
    generate_study_population_all
    Status:
    Succeeded
    Job identifier:
    ipdowv6vaerjc32n
  • Action:
    stage0_data_cleaning_vaccinated
    Status:
    Succeeded
    Job identifier:
    qpsv6php5pgd2zuf
  • Action:
    stage1_define_eligible_population_vaccinated
    Status:
    Succeeded
    Job identifier:
    d3s7qaowqwpx4nz4
  • Action:
    stage0_data_cleaning_all
    Status:
    Succeeded
    Job identifier:
    5wytgjm236atowel
  • Action:
    stage1_define_eligible_population_all
    Status:
    Succeeded
    Job identifier:
    hpnuzcodx5oyctpu
  • Action:
    development_model_age_sex_adjusted_vaccinated
    Status:
    Succeeded
    Job identifier:
    ck52q6g6yrabkhtw
  • Action:
    development_model_age_sex_vaccinated
    Status:
    Succeeded
    Job identifier:
    alz47rom5xks6o3n
  • Action:
    table_1_vaccinated
    Status:
    Succeeded
    Job identifier:
    g5nu2qsxbg764foi
  • Action:
    evaluation_cox_model_vaccinated
    Status:
    Succeeded
    Job identifier:
    yida6vqu5fwzo6t3
  • Action:
    table_2_vaccinated
    Status:
    Succeeded
    Job identifier:
    pbmsxliz24c4l234
  • Action:
    development_cox_model_vaccinated
    Status:
    Succeeded
    Job identifier:
    eqt7itlwbhsorx7t
  • Action:
    validation_cox_model_vaccinated
    Status:
    Failed
    Job identifier:
    tcswf7kbhfaf3glk
    Error:
    nonzero_exit: Job exited with error code 137: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    table_3_all
    Status:
    Succeeded
    Job identifier:
    ix43babuiyuavx7p
  • Action:
    development_cox_model_all_vax_c
    Status:
    Succeeded
    Job identifier:
    nhsz2yz7ifnfmqmm
  • Action:
    development_model_age_sex_adjusted_all_vax_td
    Status:
    Failed
    Job identifier:
    tsbmkcrudalrk53a
    Error:
    nonzero_exit: Job exited with error code 255
  • Action:
    figure_1_all
    Status:
    Succeeded
    Job identifier:
    ct5r56ffbjxnw6cv
  • Action:
    validation_cox_model_all
    Status:
    Failed
    Job identifier:
    dx35vfnrhodahaka
    Error:
    nonzero_exit: Job exited with error code 137: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    table_2_all_vax_c
    Status:
    Succeeded
    Job identifier:
    432i4u2mbezolsok
  • Action:
    suppl_figure_1_all
    Status:
    Succeeded
    Job identifier:
    5jxt4lpuzxmqoinr
  • Action:
    development_model_age_sex_all
    Status:
    Succeeded
    Job identifier:
    ulwspounbmfjotvn
  • Action:
    figure_cum_prob_km_all
    Status:
    Succeeded
    Job identifier:
    txi3vuupstetzsyu
  • Action:
    development_model_age_sex_all_vax_c
    Status:
    Succeeded
    Job identifier:
    6ckrx5xn7zddv6v3
  • Action:
    summarise_survival_data_all
    Status:
    Succeeded
    Job identifier:
    hyboidofmquwucj7
  • Action:
    evaluation_cox_model_all_vax_td
    Status:
    Succeeded
    Job identifier:
    q3pgmjluds2uola5
  • Action:
    development_cox_model_all
    Status:
    Succeeded
    Job identifier:
    h2cb534qm5yqo34f
  • Action:
    validation_cox_model_all_vax_td
    Status:
    Failed
    Job identifier:
    aonxlsxxgpwukqfm
    Error:
    nonzero_exit: Job exited with error code 137: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    development_model_age_sex_adjusted_all
    Status:
    Succeeded
    Job identifier:
    oepeg2coctzzhnob
  • Action:
    development_model_age_sex_all_vax_td
    Status:
    Succeeded
    Job identifier:
    w3ax2r5pmd3h7vuf
  • Action:
    validation_cox_model_all_vax_c
    Status:
    Failed
    Job identifier:
    mjznbpnqpngl3l5g
    Error:
    nonzero_exit: Job exited with error code 137: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    evaluation_cox_model_all
    Status:
    Succeeded
    Job identifier:
    b3lfoxuvqn3sq34b
  • Action:
    table_2_all
    Status:
    Succeeded
    Job identifier:
    lwnl7faafq2txzv4
  • Action:
    development_model_age_sex_adjusted_all_vax_c
    Status:
    Succeeded
    Job identifier:
    pvh4fjfyr5poco6n
  • Action:
    table_1_all
    Status:
    Succeeded
    Job identifier:
    yyb4ojxzdegnusun
  • Action:
    suppl_table_1_all
    Status:
    Succeeded
    Job identifier:
    fn5l6fhl5ltgwzal
  • Action:
    evaluation_cox_model_all_vax_c
    Status:
    Succeeded
    Job identifier:
    whhn4ba2i6ysfir4
  • Action:
    development_cox_model_all_vax_td
    Status:
    Succeeded
    Job identifier:
    tpdmkv6ed4trcncl
  • Action:
    figure_hist_all
    Status:
    Succeeded
    Job identifier:
    lcpspiluicxuxn5a
  • Action:
    stage0_data_cleaning_infected
    Status:
    Succeeded
    Job identifier:
    z7ymenprrnaaazdc
  • Action:
    stage1_define_eligible_population_infected
    Status:
    Succeeded
    Job identifier:
    lvyt5mfu7pihbcyr
  • Action:
    table_1_infected
    Status:
    Succeeded
    Job identifier:
    57y3p5hwesroblzk
  • Action:
    development_cox_model_infected
    Status:
    Succeeded
    Job identifier:
    x5dveoi43drw2pfe
  • Action:
    table_2_infected
    Status:
    Succeeded
    Job identifier:
    cigy32ukprb7uq2c
  • Action:
    development_model_age_sex_infected
    Status:
    Succeeded
    Job identifier:
    hzan2euijgag3zue
  • Action:
    development_model_age_sex_adjusted_infected
    Status:
    Succeeded
    Job identifier:
    6m2ox7descu7yyby
  • Action:
    validation_cox_model_infected
    Status:
    Succeeded
    Job identifier:
    iwemtoswanp7yqhe
  • Action:
    evaluation_cox_model_infected
    Status:
    Succeeded
    Job identifier:
    aehuc5rtp7ulghpn
  • Action:
    table_2_combined
    Status:
    Succeeded
    Job identifier:
    7si4ej5aathzpdhy
  • Action:
    table_1_combined
    Status:
    Succeeded
    Job identifier:
    4mjrymxuswiefgxl

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 95:37:07

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
long-covid-risk-factors
Requested by
Yinghui Wei
Branch
main
Force run dependencies
Yes
Git commit hash
ea6bb0d
Requested actions
  • run_all

Code comparison

Compare the code used in this job request