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Job request: 12858

Organisation:
University of Bristol
Workspace:
long-covid-risk-factors
ID:
pz4kv2sd7scq4all
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Yinghui Wei requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    stage0_data_cleaning_vaccinated
    Status:
    Succeeded
    Job identifier:
    4dgbefhmlhtjtohs
  • Action:
    stage1_define_eligible_population_vaccinated
    Status:
    Succeeded
    Job identifier:
    yfcxsjlgc7gsgizb
  • Action:
    stage0_data_cleaning_all
    Status:
    Succeeded
    Job identifier:
    d7i7sa4y2aenya6n
  • Action:
    stage1_define_eligible_population_all
    Status:
    Succeeded
    Job identifier:
    6gnpbn7ufx75dhyj
  • Action:
    stage0_data_cleaning_infected
    Status:
    Succeeded
    Job identifier:
    skdaw45b2dmh5fy2
  • Action:
    stage1_define_eligible_population_infected
    Status:
    Succeeded
    Job identifier:
    76zqfllfkrdsi4i4
  • Action:
    table_1_vaccinated
    Status:
    Succeeded
    Job identifier:
    ysq5i33smahzlqut
  • Action:
    development_cox_model_vaccinated
    Status:
    Succeeded
    Job identifier:
    egnx6pomjjyokilu
  • Action:
    evaluation_cox_model_vaccinated
    Status:
    Succeeded
    Job identifier:
    crhaxxelafl5njsk
  • Action:
    development_model_age_sex_adjusted_vaccinated
    Status:
    Succeeded
    Job identifier:
    wlxdpjfl5pofebdb
  • Action:
    table_2_vaccinated
    Status:
    Succeeded
    Job identifier:
    rcc4rqtm7bmuqor2
  • Action:
    development_model_age_sex_vaccinated
    Status:
    Succeeded
    Job identifier:
    7yzsvkrvzkjuacug
  • Action:
    development_model_age_sex_adjusted_infected
    Status:
    Succeeded
    Job identifier:
    zetyugtizev7bwz7
  • Action:
    table_1_infected
    Status:
    Succeeded
    Job identifier:
    fvd5og4hfqw3g6ml
  • Action:
    development_model_age_sex_infected
    Status:
    Succeeded
    Job identifier:
    7ggh4diabxosp7je
  • Action:
    evaluation_cox_model_infected
    Status:
    Succeeded
    Job identifier:
    jz4apjak6dt6yujo
  • Action:
    table_2_infected
    Status:
    Succeeded
    Job identifier:
    7dilwu7wqzdcq3af
  • Action:
    development_cox_model_infected
    Status:
    Succeeded
    Job identifier:
    ugqnqxsucjtbbs7x
  • Action:
    figure_loghr_age_vaccinated
    Status:
    Succeeded
    Job identifier:
    jfikwroyxkpulufm
  • Action:
    table_1_all
    Status:
    Succeeded
    Job identifier:
    wctdmiqwngbrezl2
  • Action:
    table_2_all
    Status:
    Succeeded
    Job identifier:
    hz6bkw7javlfijg3
  • Action:
    development_cox_model_all
    Status:
    Succeeded
    Job identifier:
    qmxottjp47heg6mu
  • Action:
    evaluation_cox_model_all_vax_c
    Status:
    Succeeded
    Job identifier:
    yrru2fecevprwqa3
  • Action:
    development_cox_model_all_vax_c
    Status:
    Succeeded
    Job identifier:
    cbamvullhfnqtm5v
  • Action:
    development_model_age_sex_all_vax_c
    Status:
    Succeeded
    Job identifier:
    rdwucgmx2xyr25qm
  • Action:
    development_model_age_sex_adjusted_all_vax_c
    Status:
    Succeeded
    Job identifier:
    yp4kc3bb6ttrvlax
  • Action:
    development_model_age_sex_adjusted_all
    Status:
    Succeeded
    Job identifier:
    t35tsbd6jsg5uha5
  • Action:
    development_cox_model_fatigue
    Status:
    Succeeded
    Job identifier:
    hf4bahibynigdw7v
  • Action:
    evaluation_cox_model_all
    Status:
    Succeeded
    Job identifier:
    lgz7foa7jbm55cr7
  • Action:
    table_2_all_vax_c
    Status:
    Succeeded
    Job identifier:
    tj46gsfz65gomfyt
  • Action:
    development_model_age_sex_all
    Status:
    Succeeded
    Job identifier:
    zppwjrtf6h3tzjir
  • Action:
    table_1_combined
    Status:
    Succeeded
    Job identifier:
    epag5qjahtymk2ub
  • Action:
    table_2_combined
    Status:
    Succeeded
    Job identifier:
    mbtip7ntr6f2yve3
  • Action:
    figure_loghr_age_all_vax_c
    Status:
    Succeeded
    Job identifier:
    4aeywvbyuoxdmbuy
  • Action:
    figure_loghr_age_infected
    Status:
    Succeeded
    Job identifier:
    ix7sp4fsx5mnfpjh
  • Action:
    figure_loghr_age_all
    Status:
    Succeeded
    Job identifier:
    t5mxy2orpepucalk
  • Action:
    combine_outputs
    Status:
    Succeeded
    Job identifier:
    ziiyeyrff76dkpiw

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 69:35:38

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
long-covid-risk-factors
Requested by
Yinghui Wei
Branch
main
Force run dependencies
No
Git commit hash
fcc44a2
Requested actions
  • stage0_data_cleaning_all
  • stage0_data_cleaning_vaccinated
  • stage0_data_cleaning_infected
  • stage1_define_eligible_population_all
  • stage1_define_eligible_population_vaccinated
  • stage1_define_eligible_population_infected
  • table_1_all
  • table_1_vaccinated
  • table_1_infected
  • table_1_combined
  • table_2_all
  • table_2_all_vax_c
  • table_2_vaccinated
  • table_2_infected
  • table_2_combined
  • development_cox_model_fatigue
  • development_cox_model_all
  • development_cox_model_all_vax_c
  • development_cox_model_vaccinated
  • development_cox_model_infected
  • development_model_age_sex_all
  • development_model_age_sex_all_vax_c
  • development_model_age_sex_vaccinated
  • development_model_age_sex_infected
  • development_model_age_sex_adjusted_all
  • development_model_age_sex_adjusted_all_vax_c
  • development_model_age_sex_adjusted_vaccinated
  • development_model_age_sex_adjusted_infected
  • figure_loghr_age_all
  • figure_loghr_age_all_vax_c
  • figure_loghr_age_vaccinated
  • figure_loghr_age_infected
  • evaluation_cox_model_all
  • evaluation_cox_model_all_vax_c
  • evaluation_cox_model_vaccinated
  • evaluation_cox_model_infected
  • combine_outputs

Code comparison

Compare the code used in this job request