Job request: 6357
- Organisation:
- University of Bristol
- Workspace:
- long-covid-risk-factors
- ID:
- mcsgiguhglm4ydiu
This page shows the technical details of what happened when the authorised researcher Yinghui Wei requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
4w5ugktr7mhhsfnk
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 10000
actions:
generate_study_population:
run: cohortextractor:latest generate_cohort --study-definition study_definition
--output-format feather
outputs:
highly_sensitive:
cohort: output/input.feather
stage1_data_cleaning:
run: r:latest analysis/stage1_data_cleaning.R
needs:
- generate_study_population
outputs:
highly_sensitive:
cohort: output/input_stage1.rds
flow_chart_csv: output/flow_chart.csv
flow_chart_html: output/flow_chart.html
table_1:
run: r:latest analysis/table_1.R
needs:
- stage1_data_cleaning
outputs:
moderately_sensitive:
descriptive_table_CSV: output/table_1.csv
descriptive_table_HTML: output/table_1.html
figure_1:
run: r:latest analysis/figure_1.R
needs:
- stage1_data_cleaning
outputs:
moderately_sensitive:
Figure_long_covid_cases: output/figure_1.svg
table_2:
run: r:latest analysis/table_2.R
needs:
- stage1_data_cleaning
outputs:
moderately_sensitive:
incidence_rate_table_CSV: output/table_2.csv
incidence_rate_talbe_HTML: output/table_2.html
suppl_figure_1:
run: r:latest analysis/suppl_figure_1.R
needs:
- stage1_data_cleaning
outputs:
moderately_sensitive:
pie_chart_long_covid_code: output/suppl_figure_1.svg
table_csv_long_covid_code: output/suppl_figure_1_data.csv
table_html_long_covid_code: output/suppl_figure_1_data.html
suppl_figure_2:
run: r:latest analysis/suppl_figure_2.R
needs:
- stage1_data_cleaning
outputs:
moderately_sensitive:
figure_monthly_long_covid: output/suppl_figure_2.svg
table_csv_monthly_long_covid: output/suppl_figure_2_data.csv
table_html_monthly_long_covid: output/suppl_figure_2_data.html
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 00:31:36
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Failed
- Backend
- TPP
- Workspace
- long-covid-risk-factors
- Requested by
- Yinghui Wei
- Branch
- main
- Force run dependencies
- No
- Git commit hash
- d70620d
- Requested actions
-
-
table_2
-
Code comparison
Compare the code used in this Job Request