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Job request: 12966

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
long_term_kidney_outcomes_after_covid
ID:
ihoy4be2siqh3tgj
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Viyaasan Mahalingasivam requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    extract_covid_matching
    Status:
    Succeeded
    Job identifier:
    lada4a62bxg4ja3p
  • Action:
    clean_covid_matching_2017
    Status:
    Succeeded
    Job identifier:
    icudvysham2qifoy
  • Action:
    extract_2017_matching
    Status:
    Succeeded
    Job identifier:
    rdavfynetw37s3r7
  • Action:
    clean_2017_matching
    Status:
    Succeeded
    Job identifier:
    viyfuwgcmxtr3g5w
  • Action:
    split_stps_2017
    Status:
    Succeeded
    Job identifier:
    gkqnomsn6jr7kfpb
  • Action:
    match_2017_stp27
    Status:
    Succeeded
    Job identifier:
    cnck2oa5xrhiyjmi
  • Action:
    match_2017_stp43
    Status:
    Succeeded
    Job identifier:
    xief6utuem4sn27t
  • Action:
    match_2017_stp36
    Status:
    Succeeded
    Job identifier:
    lui4c5krgokvd2pd
  • Action:
    match_2017_stp8
    Status:
    Succeeded
    Job identifier:
    6jeu72xluffgpm2o
  • Action:
    match_2017_stp9
    Status:
    Succeeded
    Job identifier:
    rxwhgnzs353ria7c
  • Action:
    match_2017_stp20
    Status:
    Succeeded
    Job identifier:
    qkzgkkytsz7zvt5b
  • Action:
    match_2017_stp10
    Status:
    Succeeded
    Job identifier:
    xn2k4rz3xryq4niw
  • Action:
    match_2017_stp5
    Status:
    Succeeded
    Job identifier:
    gtsov5mgbqocnur4
  • Action:
    match_2017_stp37
    Status:
    Succeeded
    Job identifier:
    i5urkibgzfqphyvc
  • Action:
    match_2017_stp33
    Status:
    Succeeded
    Job identifier:
    hq2y2eo26vu547v4
  • Action:
    match_2017_stp41
    Status:
    Succeeded
    Job identifier:
    ycwzuf7qe6jowvca
  • Action:
    match_2017_stp6
    Status:
    Succeeded
    Job identifier:
    dv2ddvt2bwmf22e7
  • Action:
    match_2017_stp22
    Status:
    Succeeded
    Job identifier:
    xlogtbpgc6c4k7tl
  • Action:
    match_2017_stp25
    Status:
    Succeeded
    Job identifier:
    5fwoqrghd477tqwb
  • Action:
    match_2017_stp35
    Status:
    Succeeded
    Job identifier:
    54obq3oaorneacjk
  • Action:
    match_2017_stp14
    Status:
    Succeeded
    Job identifier:
    er532hpkkahims5d
  • Action:
    match_2017_stp26
    Status:
    Succeeded
    Job identifier:
    3dieh544firsvnuc
  • Action:
    match_2017_stp42
    Status:
    Succeeded
    Job identifier:
    axczelszv2z5pgbk
  • Action:
    match_2017_stp49
    Status:
    Succeeded
    Job identifier:
    6vi4orm2ax5b63tr
  • Action:
    match_2017_stp44
    Status:
    Succeeded
    Job identifier:
    hshrwengi55qqisu
  • Action:
    match_2017_stp15
    Status:
    Succeeded
    Job identifier:
    cfojulodyh45ifyo
  • Action:
    match_2017_stp17
    Status:
    Succeeded
    Job identifier:
    ewv3daydwqacxc4a
  • Action:
    match_2017_stp29
    Status:
    Succeeded
    Job identifier:
    tllzvxtqxj24nlqt
  • Action:
    match_2017_stp13
    Status:
    Succeeded
    Job identifier:
    vfbo6sls2j4p26yt
  • Action:
    match_2017_stp7
    Status:
    Succeeded
    Job identifier:
    cualq6wqwtgpzb3z
  • Action:
    match_2017_stp16
    Status:
    Succeeded
    Job identifier:
    4zgpcialtxnba3th
  • Action:
    match_2017_stp21
    Status:
    Succeeded
    Job identifier:
    sheutjoyqwhyanbv
  • Action:
    match_2017_stp12
    Status:
    Succeeded
    Job identifier:
    3hafjy5423kghm6s
  • Action:
    match_2017_stp24
    Status:
    Succeeded
    Job identifier:
    hemfpt27glgihbdi
  • Action:
    match_2017_stp40
    Status:
    Succeeded
    Job identifier:
    daflur2jih4znkez
  • Action:
    match_2017_stp23
    Status:
    Succeeded
    Job identifier:
    5lz7zpllsotvfqnx
  • Action:
    combine_stps_covid_2017
    Status:
    Succeeded
    Job identifier:
    lpeqbbwfzk2h7ins
  • Action:
    combine_stps_matches_2017
    Status:
    Succeeded
    Job identifier:
    xnlnixlevyi4n4o4
  • Action:
    extract_covid_2017_additional
    Status:
    Failed
    Job identifier:
    esowc4pwcinquomm
    Error:
    nonzero_exit: Job exited with error code 3: A transient database error occurred, your job may run if you try it again, if it keeps failing then contact tech support
  • Action:
    analysis_2017
    Status:
    Failed
    Job identifier:
    vlxp7ub7ylpyxbra
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    codebook_2017_additional
    Status:
    Failed
    Job identifier:
    p737ahwvyv7f7dxr
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 60:48:40

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
long_term_kidney_outcomes_after_covid
Requested by
Viyaasan Mahalingasivam
Branch
main
Force run dependencies
No
Git commit hash
f341253
Requested actions
  • extract_covid_matching
  • clean_covid_matching_2017
  • extract_2017_matching
  • clean_2017_matching
  • split_stps_2017
  • match_2017_stp5
  • match_2017_stp6
  • match_2017_stp7
  • match_2017_stp8
  • match_2017_stp9
  • match_2017_stp10
  • match_2017_stp12
  • match_2017_stp13
  • match_2017_stp14
  • match_2017_stp15
  • match_2017_stp16
  • match_2017_stp17
  • match_2017_stp20
  • match_2017_stp21
  • match_2017_stp22
  • match_2017_stp23
  • match_2017_stp24
  • match_2017_stp25
  • match_2017_stp26
  • match_2017_stp27
  • match_2017_stp29
  • match_2017_stp33
  • match_2017_stp35
  • match_2017_stp36
  • match_2017_stp37
  • match_2017_stp40
  • match_2017_stp41
  • match_2017_stp42
  • match_2017_stp43
  • match_2017_stp44
  • match_2017_stp49
  • combine_stps_covid_2017
  • combine_stps_matches_2017
  • extract_covid_2017_additional
  • extract_2017_additional
  • codebook_2017_additional
  • analysis_2017

Code comparison

Compare the code used in this job request