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Job request: 13787

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
long_term_kidney_outcomes_after_covid
ID:
fyi2jxwnrma55ivf

This page shows the technical details of what happened when the authorised researcher Viyaasan Mahalingasivam requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    match_20174_stp43
    Status:
    Status: Failed
    Job identifier:
    p4sa3bdetqmpg4rz
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp43.csv - output/matched_cases_20174_stp43.csv - output/matched_combined_20174_stp43.csv - output/matching_report_20174_stp43.txt
  • Action:
    match_20174_stp15
    Status:
    Status: Failed
    Job identifier:
    udzqg77aynwnn2tl
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp15.csv - output/matched_cases_20174_stp15.csv - output/matched_combined_20174_stp15.csv - output/matching_report_20174_stp15.txt
  • Action:
    match_20174_stp13
    Status:
    Status: Failed
    Job identifier:
    esagsvl3s2bzwpcf
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp13.csv - output/matched_cases_20174_stp13.csv - output/matched_combined_20174_stp13.csv - output/matching_report_20174_stp13.txt
  • Action:
    match_20174_stp6
    Status:
    Status: Failed
    Job identifier:
    pq7spvwoj5vcbxzh
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp6.csv - output/matched_cases_20174_stp6.csv - output/matched_combined_20174_stp6.csv - output/matching_report_20174_stp6.txt
  • Action:
    match_20174_stp12
    Status:
    Status: Failed
    Job identifier:
    pols4yw6mdnyesju
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp12.csv - output/matched_cases_20174_stp12.csv - output/matched_combined_20174_stp12.csv - output/matching_report_20174_stp12.txt
  • Action:
    match_20174_stp42
    Status:
    Status: Failed
    Job identifier:
    453j6azms4463skw
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp42.csv - output/matched_cases_20174_stp42.csv - output/matched_combined_20174_stp42.csv - output/matching_report_20174_stp42.txt
  • Action:
    match_20174_stp7
    Status:
    Status: Failed
    Job identifier:
    z2vm3gssa6hly5cu
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp7.csv - output/matched_cases_20174_stp7.csv - output/matched_combined_20174_stp7.csv - output/matching_report_20174_stp7.txt
  • Action:
    match_20174_stp36
    Status:
    Status: Failed
    Job identifier:
    kzsylw4werrbmvsy
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp36.csv - output/matched_cases_20174_stp36.csv - output/matched_combined_20174_stp36.csv - output/matching_report_20174_stp36.txt
  • Action:
    match_20174_stp23
    Status:
    Status: Failed
    Job identifier:
    d2juutqoimyjil2f
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp23.csv - output/matched_cases_20174_stp23.csv - output/matched_combined_20174_stp23.csv - output/matching_report_20174_stp23.txt
  • Action:
    match_20174_stp24
    Status:
    Status: Failed
    Job identifier:
    sr5yfzd6ixnf35rw
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp24.csv - output/matched_cases_20174_stp24.csv - output/matched_combined_20174_stp24.csv - output/matching_report_20174_stp24.txt
  • Action:
    match_20174_stp8
    Status:
    Status: Failed
    Job identifier:
    lzvl7jn7grcler2n
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp8.csv - output/matched_cases_20174_stp8.csv - output/matched_combined_20174_stp8.csv - output/matching_report_20174_stp8.txt
  • Action:
    match_20174_stp41
    Status:
    Status: Failed
    Job identifier:
    hcgnna5ytspumcqj
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp41.csv - output/matched_cases_20174_stp41.csv - output/matched_combined_20174_stp41.csv - output/matching_report_20174_stp41.txt
  • Action:
    match_20174_stp17
    Status:
    Status: Failed
    Job identifier:
    ujvsv6uttkilh6zn
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp17.csv - output/matched_cases_20174_stp17.csv - output/matched_combined_20174_stp17.csv - output/matching_report_20174_stp17.txt
  • Action:
    match_20174_stp44
    Status:
    Status: Failed
    Job identifier:
    up7wo3b45pgdfxme
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp44.csv - output/matched_cases_20174_stp44.csv - output/matched_combined_20174_stp44.csv - output/matching_report_20174_stp44.txt
  • Action:
    match_20174_stp16
    Status:
    Status: Failed
    Job identifier:
    mqgzti4xvxntn5a7
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp16.csv - output/matched_cases_20174_stp16.csv - output/matched_combined_20174_stp16.csv - output/matching_report_20174_stp16.txt
  • Action:
    match_20174_stp9
    Status:
    Status: Failed
    Job identifier:
    iyzs4qdy32rwcvgw
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp9.csv - output/matched_cases_20174_stp9.csv - output/matched_combined_20174_stp9.csv - output/matching_report_20174_stp9.txt
  • Action:
    match_20174_stp49
    Status:
    Status: Failed
    Job identifier:
    6hykv4zywckdeget
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp49.csv - output/matched_cases_20174_stp49.csv - output/matched_combined_20174_stp49.csv - output/matching_report_20174_stp49.txt
  • Action:
    match_20174_stp33
    Status:
    Status: Failed
    Job identifier:
    s2zbzkgatobedpor
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp33.csv - output/matched_cases_20174_stp33.csv - output/matched_combined_20174_stp33.csv - output/matching_report_20174_stp33.txt
  • Action:
    match_20174_stp25
    Status:
    Status: Failed
    Job identifier:
    fnigtipeqddrfqa6
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp25.csv - output/matched_cases_20174_stp25.csv - output/matched_combined_20174_stp25.csv - output/matching_report_20174_stp25.txt
  • Action:
    match_20174_stp21
    Status:
    Status: Failed
    Job identifier:
    cssdd3toy4axb3yc
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp21.csv - output/matched_cases_20174_stp21.csv - output/matched_combined_20174_stp21.csv - output/matching_report_20174_stp21.txt
  • Action:
    match_20174_stp20
    Status:
    Status: Failed
    Job identifier:
    t5dmbnsf2z33wilw
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp20.csv - output/matched_cases_20174_stp20.csv - output/matched_combined_20174_stp20.csv - output/matching_report_20174_stp20.txt
  • Action:
    match_20174_stp10
    Status:
    Status: Failed
    Job identifier:
    o54sz7krw6buvmer
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp10.csv - output/matched_cases_20174_stp10.csv - output/matched_combined_20174_stp10.csv - output/matching_report_20174_stp10.txt
  • Action:
    match_20174_stp14
    Status:
    Status: Failed
    Job identifier:
    oyxrtgckzkgvj47q
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp14.csv - output/matched_cases_20174_stp14.csv - output/matched_combined_20174_stp14.csv - output/matching_report_20174_stp14.txt
  • Action:
    match_20174_stp35
    Status:
    Status: Failed
    Job identifier:
    qcd2zem6h4egxfxz
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp35.csv - output/matched_cases_20174_stp35.csv - output/matched_combined_20174_stp35.csv - output/matching_report_20174_stp35.txt
  • Action:
    match_20174_stp22
    Status:
    Status: Failed
    Job identifier:
    yfhjgt7dj5xigcwn
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp22.csv - output/matched_cases_20174_stp22.csv - output/matched_combined_20174_stp22.csv - output/matching_report_20174_stp22.txt
  • Action:
    match_20174_stp27
    Status:
    Status: Failed
    Job identifier:
    77s7op2dv54iq4de
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp27.csv - output/matched_cases_20174_stp27.csv - output/matched_combined_20174_stp27.csv - output/matching_report_20174_stp27.txt
  • Action:
    match_20174_stp40
    Status:
    Status: Failed
    Job identifier:
    e5tsdkp7zjux2nlo
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp40.csv - output/matched_cases_20174_stp40.csv - output/matched_combined_20174_stp40.csv - output/matching_report_20174_stp40.txt
  • Action:
    match_20174_stp26
    Status:
    Status: Failed
    Job identifier:
    2go4y6ebkqkw3u4p
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp26.csv - output/matched_cases_20174_stp26.csv - output/matched_combined_20174_stp26.csv - output/matching_report_20174_stp26.txt
  • Action:
    match_20174_stp37
    Status:
    Status: Failed
    Job identifier:
    xkt755hnqsdjzedu
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp37.csv - output/matched_cases_20174_stp37.csv - output/matched_combined_20174_stp37.csv - output/matching_report_20174_stp37.txt
  • Action:
    match_20174_stp29
    Status:
    Status: Failed
    Job identifier:
    gp4dfkxml7nrvwe6
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp29.csv - output/matched_cases_20174_stp29.csv - output/matched_combined_20174_stp29.csv - output/matching_report_20174_stp29.txt
  • Action:
    match_20174_stp5
    Status:
    Status: Failed
    Job identifier:
    icf7ljlvflobg3et
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_20174_stp5.csv - output/matched_cases_20174_stp5.csv - output/matched_combined_20174_stp5.csv - output/matching_report_20174_stp5.txt
  • Action:
    analysis_20174
    Status:
    Status: Failed
    Job identifier:
    k2lpncebbrfowmd4
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_egfr_half_20174
    Status:
    Status: Failed
    Job identifier:
    mkxeidpghsvqjw37
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_20174_additional
    Status:
    Status: Failed
    Job identifier:
    yfy4idyfasoflfcg
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    combine_stps_matches_20174
    Status:
    Status: Failed
    Job identifier:
    i7ukeenigzvnxqqg
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_esrd_20174
    Status:
    Status: Failed
    Job identifier:
    z4efryo7m7kbchzm
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    descriptive_20174
    Status:
    Status: Failed
    Job identifier:
    mntxjz5qnqmy4inx
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    combine_stps_covid_20174
    Status:
    Status: Failed
    Job identifier:
    q36t3zp3fvewco4x
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_covid_20174_additional
    Status:
    Status: Failed
    Job identifier:
    eosj2ryzqfdv4w6h
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 20:30:54

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Requested by
Viyaasan Mahalingasivam
Branch
main
Force run dependencies
No
Git commit hash
c86bbc0
Requested actions
  • match_20174_stp5
  • match_20174_stp6
  • match_20174_stp7
  • match_20174_stp8
  • match_20174_stp9
  • match_20174_stp10
  • match_20174_stp12
  • match_20174_stp13
  • match_20174_stp14
  • match_20174_stp15
  • match_20174_stp16
  • match_20174_stp17
  • match_20174_stp20
  • match_20174_stp21
  • match_20174_stp22
  • match_20174_stp23
  • match_20174_stp24
  • match_20174_stp25
  • match_20174_stp26
  • match_20174_stp27
  • match_20174_stp29
  • match_20174_stp33
  • match_20174_stp35
  • match_20174_stp36
  • match_20174_stp37
  • match_20174_stp40
  • match_20174_stp41
  • match_20174_stp42
  • match_20174_stp43
  • match_20174_stp44
  • match_20174_stp49
  • combine_stps_covid_20174
  • combine_stps_matches_20174
  • extract_covid_20174_additional
  • extract_20174_additional
  • analysis_20174
  • descriptive_20174
  • cox_esrd_20174
  • cox_egfr_half_20174

Code comparison

Compare the code used in this job request