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Job request: 13877

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
long_term_kidney_outcomes_after_covid
ID:
4wwlj2hrph2hji43

This page shows the technical details of what happened when the authorised researcher Viyaasan Mahalingasivam requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    split_stps_2017
    Status:
    Status: Succeeded
    Job identifier:
    tjj3zrgq7wd2drp4
  • Action:
    match_2017_stp13
    Status:
    Status: Succeeded
    Job identifier:
    5mpv3i63beviis3s
  • Action:
    match_2017_stp17
    Status:
    Status: Succeeded
    Job identifier:
    mghcdncsfdcsjqik
  • Action:
    match_2017_stp37
    Status:
    Status: Succeeded
    Job identifier:
    xufd56c3cy62awso
  • Action:
    match_2017_stp8
    Status:
    Status: Succeeded
    Job identifier:
    sy52i3mbqcmvgdoi
  • Action:
    match_2017_stp16
    Status:
    Status: Succeeded
    Job identifier:
    udj76k37tz6nri2q
  • Action:
    match_2017_stp23
    Status:
    Status: Succeeded
    Job identifier:
    oajvochzwzvcw4b6
  • Action:
    match_2017_stp29
    Status:
    Status: Succeeded
    Job identifier:
    2dsacbup7jghkxre
  • Action:
    match_2017_stp12
    Status:
    Status: Succeeded
    Job identifier:
    qfstcfle7ky7m4og
  • Action:
    match_2017_stp49
    Status:
    Status: Succeeded
    Job identifier:
    kgz3ykqebbmmtzrt
  • Action:
    match_2017_stp44
    Status:
    Status: Succeeded
    Job identifier:
    wcm7cr7drtzwhlzy
  • Action:
    match_2017_stp33
    Status:
    Status: Succeeded
    Job identifier:
    z4aqkk4f4d33peru
  • Action:
    match_2017_stp5
    Status:
    Status: Succeeded
    Job identifier:
    wfzkv4a7gytlv53m
  • Action:
    match_2017_stp21
    Status:
    Status: Succeeded
    Job identifier:
    a3qe2rvpkbt6fhh2
  • Action:
    match_2017_stp22
    Status:
    Status: Succeeded
    Job identifier:
    ahj6yrtj3pxu7rzm
  • Action:
    match_2017_stp14
    Status:
    Status: Succeeded
    Job identifier:
    ln737ftlnqijb2zj
  • Action:
    match_2017_stp42
    Status:
    Status: Succeeded
    Job identifier:
    caxtolejyxtyks2h
  • Action:
    match_2017_stp20
    Status:
    Status: Succeeded
    Job identifier:
    6fapzc33e4rqvban
  • Action:
    match_2017_stp7
    Status:
    Status: Succeeded
    Job identifier:
    uptwnaf7gcjsslqv
  • Action:
    match_2017_stp26
    Status:
    Status: Succeeded
    Job identifier:
    pw2usl7jjvmlaqsq
  • Action:
    match_2017_stp35
    Status:
    Status: Failed
    Job identifier:
    4ofo7rzhepk2lare
    Error:
    unmatched_patterns: No outputs found matching patterns: - output/matched_matches_2017_stp35.csv - output/matched_cases_2017_stp35.csv - output/matched_combined_2017_stp35.csv - output/matching_report_2017_stp35.txt
  • Action:
    match_2017_stp43
    Status:
    Status: Succeeded
    Job identifier:
    xucggvtwfwwr7y2h
  • Action:
    match_2017_stp40
    Status:
    Status: Succeeded
    Job identifier:
    bu3yoi73lgzqi5ml
  • Action:
    match_2017_stp6
    Status:
    Status: Succeeded
    Job identifier:
    kbwtswmhp7njf4gd
  • Action:
    match_2017_stp9
    Status:
    Status: Succeeded
    Job identifier:
    svmzrza6aj3rqy2j
  • Action:
    match_2017_stp25
    Status:
    Status: Succeeded
    Job identifier:
    sq3m6fgz5phju6zj
  • Action:
    match_2017_stp27
    Status:
    Status: Succeeded
    Job identifier:
    fftsfzcigyzyaezz
  • Action:
    match_2017_stp15
    Status:
    Status: Succeeded
    Job identifier:
    x4kwjmghxvhb7dq6
  • Action:
    match_2017_stp10
    Status:
    Status: Succeeded
    Job identifier:
    zq2gw3ej3z47gpwp
  • Action:
    match_2017_stp36
    Status:
    Status: Succeeded
    Job identifier:
    hq34ynu2iijbsikw
  • Action:
    match_2017_stp24
    Status:
    Status: Succeeded
    Job identifier:
    b5cwagkkyz6f5r55
  • Action:
    match_2017_stp41
    Status:
    Status: Succeeded
    Job identifier:
    tnfrhvhtg3kcgywx
  • Action:
    cox_egfr_half_2017
    Status:
    Status: Failed
    Job identifier:
    pkrm7knhlrux6qm5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    analysis_2017
    Status:
    Status: Failed
    Job identifier:
    wvwnmx2wurg4hqhr
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    combine_stps_matches_2017
    Status:
    Status: Failed
    Job identifier:
    j2odaglta5icssc2
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    combine_stps_covid_2017
    Status:
    Status: Failed
    Job identifier:
    2xh56mr6ebi5m7bw
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_2017_additional
    Status:
    Status: Failed
    Job identifier:
    4j4nt4iqf6d5rlrp
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    extract_covid_2017_additional
    Status:
    Status: Failed
    Job identifier:
    hjlri37mgl7yzp5h
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_esrd_2017
    Status:
    Status: Failed
    Job identifier:
    b3mlb244lgjnsvmu
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 49:15:15

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Requested by
Viyaasan Mahalingasivam
Branch
main
Force run dependencies
No
Git commit hash
123f209
Requested actions
  • split_stps_2017
  • match_2017_stp5
  • match_2017_stp6
  • match_2017_stp7
  • match_2017_stp8
  • match_2017_stp9
  • match_2017_stp10
  • match_2017_stp12
  • match_2017_stp13
  • match_2017_stp14
  • match_2017_stp15
  • match_2017_stp16
  • match_2017_stp17
  • match_2017_stp20
  • match_2017_stp21
  • match_2017_stp22
  • match_2017_stp23
  • match_2017_stp24
  • match_2017_stp25
  • match_2017_stp26
  • match_2017_stp27
  • match_2017_stp29
  • match_2017_stp33
  • match_2017_stp35
  • match_2017_stp36
  • match_2017_stp37
  • match_2017_stp40
  • match_2017_stp41
  • match_2017_stp42
  • match_2017_stp43
  • match_2017_stp44
  • match_2017_stp49
  • combine_stps_covid_2017
  • combine_stps_matches_2017
  • extract_covid_2017_additional
  • extract_2017_additional
  • analysis_2017
  • cox_esrd_2017
  • cox_egfr_half_2017

Code comparison

Compare the code used in this job request