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Job request: 19705

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
long_term_kidney_outcomes_after_covid
ID:
nkknp7z7ez3e4igl
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Viyaasan Mahalingasivam requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    extract_covid_hospitalised
    Status:
    Succeeded
    Job identifier:
    vx2b2nxpwg7fmbbc
  • Action:
    extract_covid_matching
    Status:
    Succeeded
    Job identifier:
    d5dsutt6qow6egxy
  • Action:
    clean_covid_matching_2017
    Status:
    Succeeded
    Job identifier:
    vs2vstwm3rjo5mqg
  • Action:
    clean_covid_matching_2020
    Status:
    Succeeded
    Job identifier:
    iclrnoueqwdivzuv
  • Action:
    split_stps_2017
    Status:
    Succeeded
    Job identifier:
    olxqsg57xfv7vff4
  • Action:
    split_stps_2020
    Status:
    Succeeded
    Job identifier:
    urxpozgwu5fyazz7
  • Action:
    match_2017_stp10
    Status:
    Succeeded
    Job identifier:
    lf7cdmxcjty7hidq
  • Action:
    match_2017_stp12
    Status:
    Succeeded
    Job identifier:
    t6xpyjpkeqlejnwq
  • Action:
    match_2017_stp13
    Status:
    Succeeded
    Job identifier:
    mr5kbsiityvxurpi
  • Action:
    match_2017_stp14
    Status:
    Succeeded
    Job identifier:
    i2whmrqjvmqha4kj
  • Action:
    match_2017_stp15
    Status:
    Succeeded
    Job identifier:
    blbnydcnbjue4rjj
  • Action:
    match_2017_stp16
    Status:
    Succeeded
    Job identifier:
    4mvp7fzglzlyq75a
  • Action:
    match_2017_stp17
    Status:
    Succeeded
    Job identifier:
    jqwtqqtidhiazvru
  • Action:
    match_2017_stp20
    Status:
    Succeeded
    Job identifier:
    ewwxpex5bs4yvzq5
  • Action:
    match_2017_stp21
    Status:
    Succeeded
    Job identifier:
    b7yugnva6ejdlhvk
  • Action:
    match_2017_stp22
    Status:
    Succeeded
    Job identifier:
    gt6a3gb5fu6xscbi
  • Action:
    match_2017_stp23
    Status:
    Succeeded
    Job identifier:
    ki4ygprazwxacgi6
  • Action:
    match_2017_stp24
    Status:
    Succeeded
    Job identifier:
    vntubc34rybdxtd5
  • Action:
    match_2017_stp25
    Status:
    Succeeded
    Job identifier:
    rqvc652j2jxxjoi5
  • Action:
    match_2017_stp26
    Status:
    Succeeded
    Job identifier:
    3vovjpf2u5rsmy4c
  • Action:
    match_2017_stp27
    Status:
    Succeeded
    Job identifier:
    ozwiuljnyy5rg7lq
  • Action:
    match_2017_stp29
    Status:
    Succeeded
    Job identifier:
    vhukihg4lszbayis
  • Action:
    match_2017_stp33
    Status:
    Succeeded
    Job identifier:
    dxe6pyqjp4ignsqd
  • Action:
    match_2017_stp35
    Status:
    Succeeded
    Job identifier:
    h7e5cv223m6oaxo2
  • Action:
    match_2017_stp36
    Status:
    Succeeded
    Job identifier:
    yvh7ziecy4zvz7yd
  • Action:
    match_2017_stp37
    Status:
    Succeeded
    Job identifier:
    rwmznr3arumzqdjl
  • Action:
    match_2017_stp40
    Status:
    Succeeded
    Job identifier:
    qltd4vl6xwpi6aju
  • Action:
    match_2017_stp41
    Status:
    Succeeded
    Job identifier:
    oikhx4twuvt6ayjw
  • Action:
    match_2017_stp42
    Status:
    Succeeded
    Job identifier:
    c53lsiy7omngwem6
  • Action:
    match_2017_stp43
    Status:
    Succeeded
    Job identifier:
    j5ive4fb35kszp35
  • Action:
    match_2017_stp44
    Status:
    Succeeded
    Job identifier:
    ghdu6h4clbj2vydk
  • Action:
    match_2017_stp49
    Status:
    Succeeded
    Job identifier:
    74etptj26kfl56qc
  • Action:
    match_2017_stp5
    Status:
    Succeeded
    Job identifier:
    ci2nshxgkuz5eb5t
  • Action:
    match_2017_stp6
    Status:
    Succeeded
    Job identifier:
    hasbrltk6bqiiom2
  • Action:
    match_2017_stp7
    Status:
    Succeeded
    Job identifier:
    na473drzut6tpg7r
  • Action:
    match_2017_stp8
    Status:
    Succeeded
    Job identifier:
    ehazap4ngjgqzlqy
  • Action:
    match_2017_stp9
    Status:
    Succeeded
    Job identifier:
    z3ahcgwy72qmgtgb
  • Action:
    match_2020_stp10
    Status:
    Succeeded
    Job identifier:
    yryfkzeevigzkt2d
  • Action:
    match_2020_stp12
    Status:
    Succeeded
    Job identifier:
    ax5k5gdcvsyxgofi
  • Action:
    match_2020_stp13
    Status:
    Succeeded
    Job identifier:
    ddypcqo6ykuv64he
  • Action:
    match_2020_stp14
    Status:
    Succeeded
    Job identifier:
    ol23lfspyfqb5uh6
  • Action:
    match_2020_stp15
    Status:
    Succeeded
    Job identifier:
    wrd6fj5ecmdygdqs
  • Action:
    match_2020_stp16
    Status:
    Succeeded
    Job identifier:
    cvyhdrrrpytcdkqv
  • Action:
    match_2020_stp17
    Status:
    Succeeded
    Job identifier:
    rmfb7ift7ppdhya2
  • Action:
    match_2020_stp20
    Status:
    Succeeded
    Job identifier:
    gegsftym65he4z3x
  • Action:
    match_2020_stp21
    Status:
    Succeeded
    Job identifier:
    xhhyeulrf7q5oyt7
  • Action:
    match_2020_stp22
    Status:
    Succeeded
    Job identifier:
    y75ihjuiwpury65k
  • Action:
    match_2020_stp23
    Status:
    Succeeded
    Job identifier:
    7g74sutgv4rvjpie
  • Action:
    match_2020_stp24
    Status:
    Succeeded
    Job identifier:
    xieyp55rmkjv3zda
  • Action:
    match_2020_stp25
    Status:
    Succeeded
    Job identifier:
    iodbzst4epobeidw
  • Action:
    match_2020_stp26
    Status:
    Succeeded
    Job identifier:
    4yeorasfwuk4mgbz
  • Action:
    match_2020_stp27
    Status:
    Succeeded
    Job identifier:
    on4mnvquch5aizev
  • Action:
    match_2020_stp29
    Status:
    Succeeded
    Job identifier:
    tfles6gonsojtvyv
  • Action:
    match_2020_stp33
    Status:
    Succeeded
    Job identifier:
    ylwm36axn6judsmc
  • Action:
    match_2020_stp35
    Status:
    Succeeded
    Job identifier:
    7s4w5xlib25cgzir
  • Action:
    match_2020_stp36
    Status:
    Succeeded
    Job identifier:
    wkwf3vpearlsma7s
  • Action:
    match_2020_stp37
    Status:
    Succeeded
    Job identifier:
    c4ye33cqkywqkpz6
  • Action:
    match_2020_stp40
    Status:
    Succeeded
    Job identifier:
    wmlhrkydtgewkrbc
  • Action:
    match_2020_stp41
    Status:
    Succeeded
    Job identifier:
    u4vlsuoxs6fsj5px
  • Action:
    match_2020_stp42
    Status:
    Succeeded
    Job identifier:
    bdpqs4rvyp23a6lz
  • Action:
    match_2020_stp43
    Status:
    Succeeded
    Job identifier:
    imrmsactuknhmbzi
  • Action:
    match_2020_stp44
    Status:
    Succeeded
    Job identifier:
    jk3ycsxt7ruymiba
  • Action:
    match_2020_stp49
    Status:
    Succeeded
    Job identifier:
    fhrn6elhewh3tvqp
  • Action:
    match_2020_stp5
    Status:
    Succeeded
    Job identifier:
    i6ikhz4caogrt2ic
  • Action:
    match_2020_stp6
    Status:
    Succeeded
    Job identifier:
    k63lbog2jbpfzmdv
  • Action:
    match_2020_stp7
    Status:
    Succeeded
    Job identifier:
    o7rcj6xmc23ek54f
  • Action:
    match_2020_stp8
    Status:
    Succeeded
    Job identifier:
    yl4millomazpmnm7
  • Action:
    match_2020_stp9
    Status:
    Succeeded
    Job identifier:
    if575gyxir6ln4tf
  • Action:
    combine_stps_covid_2017
    Status:
    Succeeded
    Job identifier:
    sesm5eclbzgon3xv
  • Action:
    combine_stps_matches_2017
    Status:
    Succeeded
    Job identifier:
    mniuf44c3wlodrt3
  • Action:
    combine_stps_covid_2020
    Status:
    Succeeded
    Job identifier:
    nzy4pfqyx4wpw5ps
  • Action:
    combine_stps_matches_2020
    Status:
    Succeeded
    Job identifier:
    54b4l3oaxrh3lalh
  • Action:
    extract_2017_additional
    Status:
    Succeeded
    Job identifier:
    ogqhul534mpuwws4
  • Action:
    extract_2020_additional
    Status:
    Succeeded
    Job identifier:
    2g5x36wwff3rz52j
  • Action:
    extract_covid_2017_additional
    Status:
    Succeeded
    Job identifier:
    zrcamx5ylkjccvso
  • Action:
    analysis_2017
    Status:
    Succeeded
    Job identifier:
    jt3x4klnihaqnpgj
  • Action:
    extract_covid_2020_additional
    Status:
    Succeeded
    Job identifier:
    ig6c2n6pftkfcwx6
  • Action:
    cox_2017_full_forest
    Status:
    Succeeded
    Job identifier:
    m4bgleavevcu47nf
  • Action:
    cox_models_2017_aki
    Status:
    Failed
    Job identifier:
    o2b7j4rqvz2d4yrf
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_models_2017_death
    Status:
    Failed
    Job identifier:
    z4c3ir2cysa3obol
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_models_2017_egfr_half
    Status:
    Failed
    Job identifier:
    zpr45irvvmjmpdxi
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    analysis_2020
    Status:
    Succeeded
    Job identifier:
    eed6gdbhsal6zj3t
  • Action:
    cox_models_2017_esrd
    Status:
    Failed
    Job identifier:
    twfnrx3ypemuisnf
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    extract_pneumonia_hospitalised
    Status:
    Succeeded
    Job identifier:
    rkyq6giql5ydzd63
  • Action:
    analysis_complete
    Status:
    Succeeded
    Job identifier:
    fgx4mc2ujrh26z7o
  • Action:
    cox_models_2020_aki
    Status:
    Failed
    Job identifier:
    ziw2yxuujghlnhqe
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_models_2020_death
    Status:
    Failed
    Job identifier:
    lwaqejypydcqsmub
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_models_2020_egfr_half
    Status:
    Succeeded
    Job identifier:
    hidyehdeyia73jrd
  • Action:
    cox_models_2020_esrd
    Status:
    Failed
    Job identifier:
    5h2l6pjxjdqqg2ze
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    descriptive_covid_aki
    Status:
    Succeeded
    Job identifier:
    hlgswhkqkpzsif7k
  • Action:
    descriptive_covid_krt
    Status:
    Succeeded
    Job identifier:
    lereos6nw47wcjfz
  • Action:
    cox_models3_2017_aki
    Status:
    Succeeded
    Job identifier:
    vznccnbswwer2dic
  • Action:
    cox_models3_2017_death
    Status:
    Succeeded
    Job identifier:
    rh4uebu27gsxfbs3
  • Action:
    cox_models3_2017_egfr_half
    Status:
    Succeeded
    Job identifier:
    edg3zztwhuqpn6fa
  • Action:
    analysis_hospitalised
    Status:
    Succeeded
    Job identifier:
    55p723dhnb4wwfh2
  • Action:
    cox_models3_2017_esrd
    Status:
    Succeeded
    Job identifier:
    6ipu237ax2bkucl4
  • Action:
    cox_models3_2020_aki
    Status:
    Succeeded
    Job identifier:
    5n4clr4y4iziijjj
  • Action:
    cox_models3_2020_death
    Status:
    Succeeded
    Job identifier:
    quvq3e35t234phwp
  • Action:
    cox_models3_2020_egfr_half
    Status:
    Succeeded
    Job identifier:
    6bsoldazj4isqf7s
  • Action:
    cox_models3_2020_esrd
    Status:
    Succeeded
    Job identifier:
    v3aa3nbs224vxqvb
  • Action:
    cox_models_hospitalised_aki
    Status:
    Succeeded
    Job identifier:
    frg5otmfetduoaek
  • Action:
    cox_models_hospitalised_death
    Status:
    Succeeded
    Job identifier:
    xlne3qhmdoecfyo4
  • Action:
    cox_models_hospitalised_egfr_half
    Status:
    Succeeded
    Job identifier:
    kxquj6io5fxy37hl
  • Action:
    cox_models_hospitalised_esrd
    Status:
    Succeeded
    Job identifier:
    kwrzq3b37rv7mpuu
  • Action:
    crude_rates_aki
    Status:
    Succeeded
    Job identifier:
    iazbth2okgnb74sq
  • Action:
    crude_rates_death
    Status:
    Succeeded
    Job identifier:
    xzybofjrjro7wflu
  • Action:
    crude_rates_egfr_half
    Status:
    Succeeded
    Job identifier:
    4tzh6viqbgctdevf
  • Action:
    crude_rates_esrd
    Status:
    Succeeded
    Job identifier:
    v34g7g623e7gecws
  • Action:
    descriptive_case
    Status:
    Succeeded
    Job identifier:
    xeijg7h33qn3fh6d
  • Action:
    descriptive_case_complete
    Status:
    Succeeded
    Job identifier:
    7mftdkbcfks36h6m
  • Action:
    descriptive_covid_severity
    Status:
    Succeeded
    Job identifier:
    zb33xo2xjqjjpiuj
  • Action:
    descriptive_covid_vax
    Status:
    Succeeded
    Job identifier:
    qm4muupy3uxhudhx
  • Action:
    descriptive_wave
    Status:
    Succeeded
    Job identifier:
    3f3abvotyhynwk6v

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 742:57:32

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
long_term_kidney_outcomes_after_covid
Requested by
Viyaasan Mahalingasivam
Branch
main
Force run dependencies
No
Git commit hash
5ea9901
Requested actions
  • extract_covid_matching
  • clean_covid_matching_2017
  • split_stps_2017
  • match_2017_stp5
  • match_2017_stp6
  • match_2017_stp7
  • match_2017_stp8
  • match_2017_stp9
  • match_2017_stp10
  • match_2017_stp12
  • match_2017_stp13
  • match_2017_stp14
  • match_2017_stp15
  • match_2017_stp16
  • match_2017_stp17
  • match_2017_stp20
  • match_2017_stp21
  • match_2017_stp22
  • match_2017_stp23
  • match_2017_stp24
  • match_2017_stp25
  • match_2017_stp26
  • match_2017_stp27
  • match_2017_stp29
  • match_2017_stp33
  • match_2017_stp35
  • match_2017_stp36
  • match_2017_stp37
  • match_2017_stp40
  • match_2017_stp41
  • match_2017_stp42
  • match_2017_stp43
  • match_2017_stp44
  • match_2017_stp49
  • combine_stps_covid_2017
  • combine_stps_matches_2017
  • extract_covid_2017_additional
  • extract_2017_additional
  • analysis_2017
  • extract_covid_hospitalised
  • extract_pneumonia_hospitalised
  • analysis_hospitalised
  • cox_2017_full_forest
  • clean_covid_matching_2020
  • split_stps_2020
  • match_2020_stp5
  • match_2020_stp6
  • match_2020_stp7
  • match_2020_stp8
  • match_2020_stp9
  • match_2020_stp10
  • match_2020_stp12
  • match_2020_stp13
  • match_2020_stp14
  • match_2020_stp15
  • match_2020_stp16
  • match_2020_stp17
  • match_2020_stp20
  • match_2020_stp21
  • match_2020_stp22
  • match_2020_stp23
  • match_2020_stp24
  • match_2020_stp25
  • match_2020_stp26
  • match_2020_stp27
  • match_2020_stp29
  • match_2020_stp33
  • match_2020_stp35
  • match_2020_stp36
  • match_2020_stp37
  • match_2020_stp40
  • match_2020_stp41
  • match_2020_stp42
  • match_2020_stp43
  • match_2020_stp44
  • match_2020_stp49
  • combine_stps_covid_2020
  • combine_stps_matches_2020
  • extract_covid_2020_additional
  • extract_2020_additional
  • analysis_2020
  • descriptive_case
  • descriptive_covid_severity
  • descriptive_covid_aki
  • descriptive_wave
  • descriptive_covid_vax
  • descriptive_covid_krt
  • crude_rates_esrd
  • crude_rates_egfr_half
  • crude_rates_aki
  • crude_rates_death
  • cox_models_2017_esrd
  • cox_models_2017_egfr_half
  • cox_models_2017_aki
  • cox_models_2017_death
  • cox_models_2020_esrd
  • cox_models_2020_egfr_half
  • cox_models_2020_aki
  • cox_models_2020_death
  • cox_models_hospitalised_esrd
  • cox_models_hospitalised_egfr_half
  • cox_models_hospitalised_aki
  • cox_models_hospitalised_death
  • analysis_complete
  • descriptive_case_complete
  • cox_models3_2017_esrd
  • cox_models3_2017_egfr_half
  • cox_models3_2017_aki
  • cox_models3_2017_death
  • cox_models3_2020_esrd
  • cox_models3_2020_egfr_half
  • cox_models3_2020_aki
  • cox_models3_2020_death

Code comparison

Compare the code used in this job request