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Job request: 2925

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
households-short-report
ID:
vkoxmnzwktiq26yb
View repo View project.yaml

This page shows the technical details of what happened when authorised researcher Emily Nightingale requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the indicated Requested Actions with the Pipeline section below, you can infer what security level various outputs were written to. Outputs marked as highly_sensitive can never be viewed directly by a researcher; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  check_hhid:
    needs: [generate_study_population]
    run:  r:latest analysis/check_hhid.R output/input.csv
    outputs:
      moderately_sensitive:
        log: output/check_hhid_log.txt
        fig1: output/household_tpp_coverage.png
        fig2: output/household_size_discrepancies.png
        fig3: output/household_size_discrepancies_constr.png
        fig4: output/household_size_total.png
        fig5: output/household_size_total_constr.png

  repeat_checks_hhid:
    needs: [generate_study_population]
    run:  stata-mp:latest analysis/repeat_checks_hhid.do 
    outputs:
      moderately_sensitive:
        log: output/statalogs/repeat_checks_hhid.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:15:16

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
households-short-report
Requested by
Emily Nightingale
Branch
main
Force run dependencies
No
Git commit hash
2d33e2d
Requested actions
  • repeat_checks_hhid

Code comparison

Compare the code used in this Job Request